Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP15_T7_N10
         (767 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC685.06 |rps001|rps0-1, rpsa-1, rps0|40S ribosomal protein S0...   126   3e-30
SPAPJ698.02c |rps002|rpsa-2, rps0-2, rps0|40S ribosomal protein ...   122   4e-29
SPAC24C9.10c |mrp4||mitochondrial ribosomal protein subunit S2|S...    38   0.002
SPAC27E2.06c |||methionine-tRNA ligase, mitochondrial|Schizosacc...    28   1.3  
SPCC736.06 |||aspartate-tRNA ligase|Schizosaccharomyces pombe|ch...    27   3.9  
SPCC1840.08c |||protein disulfide isomerase |Schizosaccharomyces...    26   5.2  
SPAC3F10.05c |mug113||DUF1766 family protein|Schizosaccharomyces...    25   9.0  

>SPBC685.06 |rps001|rps0-1, rpsa-1, rps0|40S ribosomal protein S0A
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 292

 Score =  126 bits (304), Expect = 3e-30
 Identities = 66/112 (58%), Positives = 75/112 (66%)
 Frame = -3

Query: 693 TXIAGRFTPGAFXKPDPSCIPVNLRXLIVLDPAQDHQPITEASYVNIPVIALCNTDSPLR 514
           T IAGRFTPG F            R ++V DP  D Q I EAS+VNIPVIALC+TDS L 
Sbjct: 99  TAIAGRFTPGNFTNYITRTYR-EPRLIVVTDPRADAQAIKEASFVNIPVIALCDTDSILN 157

Query: 513 FVDIAIPCNTKSSHSIGLMWWLLAREVLRLRGVLPRDQRWDVVVDLFFYP*P 358
            VDIAIP N K   SIGL+W+LLAREVLR+RG L R   WDV+ DL+FY  P
Sbjct: 158 HVDIAIPTNNKGRKSIGLIWYLLAREVLRVRGTLSRSAPWDVMPDLYFYRDP 209


>SPAPJ698.02c |rps002|rpsa-2, rps0-2, rps0|40S ribosomal protein
           S0B|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 287

 Score =  122 bits (295), Expect = 4e-29
 Identities = 65/112 (58%), Positives = 74/112 (66%)
 Frame = -3

Query: 693 TXIAGRFTPGAFXKPDPSCIPVNLRXLIVLDPAQDHQPITEASYVNIPVIALCNTDSPLR 514
           T IAGRFTPG F            R +IV DP  D Q I EAS+VNIPVIALC+TDS L 
Sbjct: 100 TAIAGRFTPGNFTNYITRTYR-EPRLIIVTDPRADAQAIKEASFVNIPVIALCDTDSILN 158

Query: 513 FVDIAIPCNTKSSHSIGLMWWLLAREVLRLRGVLPRDQRWDVVVDLFFYP*P 358
            VD+AIP N K   SIGL W+LLAREVLRLRG + R   W+V+ DL+FY  P
Sbjct: 159 HVDVAIPINNKGYKSIGLAWYLLAREVLRLRGNISRTTAWEVMPDLYFYRDP 210


>SPAC24C9.10c |mrp4||mitochondrial ribosomal protein subunit
           S2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 263

 Score = 37.9 bits (84), Expect = 0.002
 Identities = 18/59 (30%), Positives = 31/59 (52%)
 Frame = -3

Query: 615 LIVLDPAQDHQPITEASYVNIPVIALCNTDSPLRFVDIAIPCNTKSSHSIGLMWWLLAR 439
           +++L+P ++     EA   ++P I + +TD+  R V   IP N  S     L+  LL+R
Sbjct: 183 MVILNPLENKSACLEAQKTHVPTIGIIDTDADPRMVTYPIPANDDSLRCTDLIAGLLSR 241


>SPAC27E2.06c |||methionine-tRNA ligase,
           mitochondrial|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 539

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 14/37 (37%), Positives = 21/37 (56%)
 Frame = -3

Query: 576 TEASYVNIPVIALCNTDSPLRFVDIAIPCNTKSSHSI 466
           T A    +  + LC+ +S  RF D+A+  NTK +H I
Sbjct: 75  TVAQTEGVSPLQLCDRNSK-RFADLAVAANTKFTHFI 110


>SPCC736.06 |||aspartate-tRNA ligase|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 611

 Score = 26.6 bits (56), Expect = 3.9
 Identities = 14/28 (50%), Positives = 17/28 (60%)
 Frame = -1

Query: 422 VVCFPVTSAGMLWLICSSTRDPEESEKD 339
           V+ FP TS+G   LI S +  PEE  KD
Sbjct: 571 VIAFPKTSSGADLLIGSPSAIPEEMLKD 598


>SPCC1840.08c |||protein disulfide isomerase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 561

 Score = 26.2 bits (55), Expect = 5.2
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = -3

Query: 468 IGLMWWLLAREVLRLRGVLPRDQRWD 391
           IGL W L  REV R + +  R++ WD
Sbjct: 365 IGLKWTLKLREVERKQLLTAREKWWD 390


>SPAC3F10.05c |mug113||DUF1766 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 326

 Score = 25.4 bits (53), Expect = 9.0
 Identities = 11/32 (34%), Positives = 15/32 (46%)
 Frame = -3

Query: 459 MWWLLAREVLRLRGVLPRDQRWDVVVDLFFYP 364
           +WW L+R+  R    L R  +W  V     YP
Sbjct: 68  IWWSLSRKATRFYRWLSRSLKWRPVTYETVYP 99


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,869,595
Number of Sequences: 5004
Number of extensions: 55723
Number of successful extensions: 144
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 139
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 142
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 369323696
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)