Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP15_T7_M19
(745 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_03_0088 - 12242020-12242941,12243467-12243550,12243591-12244438 33 0.32
12_02_0088 + 13475547-13476705,13477801-13477931 31 1.3
12_02_0081 + 13342692-13343514,13343520-13343821 31 1.3
12_02_0080 + 13314740-13315892,13316725-13316732 31 1.3
08_01_0622 + 5429317-5429403,5429673-5429765,5429950-5430030,543... 30 1.7
10_06_0011 - 9581916-9582167,9582523-9582574,9584105-9584331 29 5.2
08_01_0141 - 1115794-1117584,1117803-1117897,1119557-1119821 28 6.8
05_07_0006 - 27001038-27001600,27001713-27001980 28 6.8
03_06_0191 - 32228642-32228949,32229028-32230567 28 6.8
01_01_0094 - 730484-731570,732030-732715 28 6.8
06_03_0099 + 16633928-16638213,16638299-16638386,16638823-166389... 28 9.0
05_03_0637 - 16465433-16466242 28 9.0
05_02_0003 + 5520331-5520476,5520572-5520644,5520762-5520928,552... 28 9.0
04_04_1376 + 33058306-33059763,33059851-33059991,33060594-330606... 28 9.0
03_05_0543 - 25404630-25405408,25405461-25405605 28 9.0
>09_03_0088 - 12242020-12242941,12243467-12243550,12243591-12244438
Length = 617
Score = 32.7 bits (71), Expect = 0.32
Identities = 21/68 (30%), Positives = 33/68 (48%), Gaps = 1/68 (1%)
Frame = +2
Query: 23 PHRHKISPXSLGSTDSRATT-VHAKPFSTSVLQGPRWSICYYHQDLHRRRLQAGSRPDPS 199
PHRH+++P SL S S T HA+P ++V+ + D HR + P P
Sbjct: 173 PHRHRLTPKSLASNASLPVTGYHAEPQQSTVVASRAF-------DAHRPPFHSAGLPPPP 225
Query: 200 ALSVAHVL 223
S++ +L
Sbjct: 226 RRSMSLLL 233
>12_02_0088 + 13475547-13476705,13477801-13477931
Length = 429
Score = 30.7 bits (66), Expect = 1.3
Identities = 16/39 (41%), Positives = 19/39 (48%), Gaps = 2/39 (5%)
Frame = +1
Query: 88 RETLLHVSPPGXSLEYLLLPPRSAPTE--APSGLTPRPF 198
R+ LL + PP L L+LP P PSG P PF
Sbjct: 41 RDALLQLRPPPPPLPRLVLPEADGPAFYCVPSGCRPHPF 79
>12_02_0081 + 13342692-13343514,13343520-13343821
Length = 374
Score = 30.7 bits (66), Expect = 1.3
Identities = 16/39 (41%), Positives = 19/39 (48%), Gaps = 2/39 (5%)
Frame = +1
Query: 88 RETLLHVSPPGXSLEYLLLPPRSAPTE--APSGLTPRPF 198
R+ LL + PP L L+LP P PSG P PF
Sbjct: 41 RDALLQLRPPPPPLPRLVLPEADGPAFYCVPSGCRPHPF 79
>12_02_0080 + 13314740-13315892,13316725-13316732
Length = 386
Score = 30.7 bits (66), Expect = 1.3
Identities = 16/39 (41%), Positives = 19/39 (48%), Gaps = 2/39 (5%)
Frame = +1
Query: 88 RETLLHVSPPGXSLEYLLLPPRSAPTE--APSGLTPRPF 198
R+ LL + PP L L+LP P PSG P PF
Sbjct: 41 RDALLQLRPPPPPLPRLVLPEADGPAFYCVPSGCRPHPF 79
>08_01_0622 +
5429317-5429403,5429673-5429765,5429950-5430030,
5430166-5430237,5430379-5430495,5430585-5430671,
5431126-5431200,5431442-5431566,5432489-5432621,
5432719-5432808,5433210-5433389
Length = 379
Score = 30.3 bits (65), Expect = 1.7
Identities = 27/106 (25%), Positives = 43/106 (40%)
Frame = +2
Query: 23 PHRHKISPXSLGSTDSRATTVHAKPFSTSVLQGPRWSICYYHQDLHRRRLQAGSRPDPSA 202
P R + L S S A+++ + S +G WS CY+H H+ + G +
Sbjct: 4 PRRLPLLAGLLRSASSDASSIPPNRKNVSGREGFLWSSCYFHSTRHQTS-REGEQMAKEL 62
Query: 203 LSVAHVLLVTA**YQIKNLASHVPVTVVYRQNASAPSIFRAGCFGR 340
L + L+ +I N + V V +A FRAG G+
Sbjct: 63 LD--PLALIKDEVSEISNRLRSMVVAEVPELTLAAGYFFRAGAEGK 106
>10_06_0011 - 9581916-9582167,9582523-9582574,9584105-9584331
Length = 176
Score = 28.7 bits (61), Expect = 5.2
Identities = 15/41 (36%), Positives = 21/41 (51%)
Frame = -3
Query: 221 GRARRRAQKGLGVSPLGASVGADLGGSSKYSSEXPGGLTWR 99
GR+ +R + V P+ A VG GG + S+ G TWR
Sbjct: 11 GRSAQRLAWCIEVPPVAAEVGTAQGGVASGSAAGGGRPTWR 51
>08_01_0141 - 1115794-1117584,1117803-1117897,1119557-1119821
Length = 716
Score = 28.3 bits (60), Expect = 6.8
Identities = 16/36 (44%), Positives = 18/36 (50%)
Frame = +1
Query: 391 CCHERPTPFMVSHERFLGALTLRLVHPTAPVLLTKL 498
C E PF HE ALTL + PTA L+ KL
Sbjct: 324 CIRELAVPFF-HHEVVKRALTLGMESPTAEALIVKL 358
>05_07_0006 - 27001038-27001600,27001713-27001980
Length = 276
Score = 28.3 bits (60), Expect = 6.8
Identities = 17/39 (43%), Positives = 22/39 (56%)
Frame = +3
Query: 60 RLTREQLLFTRNPSPRQSSRXLAGVFATTTKICTDGGSK 176
+LT E+ L R P S L +F TTTK+ T GG+K
Sbjct: 159 QLTVEEPLMRRTVCPVPDSA-LRRIFHTTTKVITLGGAK 196
>03_06_0191 - 32228642-32228949,32229028-32230567
Length = 615
Score = 28.3 bits (60), Expect = 6.8
Identities = 15/43 (34%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
Frame = +1
Query: 106 VSPPGXSLEYLLLPPRSAPTEAPSGL-TPRPFCALRRARPTRY 231
++PP + +LLLPPR A SG P P A + P +
Sbjct: 1 MAPPPATSRFLLLPPRLAAARGISGQPPPSPHAAAPTSTPQAF 43
>01_01_0094 - 730484-731570,732030-732715
Length = 590
Score = 28.3 bits (60), Expect = 6.8
Identities = 12/32 (37%), Positives = 16/32 (50%)
Frame = +1
Query: 358 LSGFRLPWPPSCCHERPTPFMVSHERFLGALT 453
+ G +LP P C + P P +V RF LT
Sbjct: 552 VDGLQLPSRPFFCDDEPLPLLVDSYRFSSELT 583
>06_03_0099 +
16633928-16638213,16638299-16638386,16638823-16638950,
16640008-16640278
Length = 1590
Score = 27.9 bits (59), Expect = 9.0
Identities = 16/31 (51%), Positives = 18/31 (58%), Gaps = 3/31 (9%)
Frame = +1
Query: 322 GWLLRQVSRCTLLSGFRL---PWPPSCCHER 405
G+LLR + LLS RL P PP CCH R
Sbjct: 63 GYLLRHSAHFLLLSA-RLRPPPPPPRCCHRR 92
>05_03_0637 - 16465433-16466242
Length = 269
Score = 27.9 bits (59), Expect = 9.0
Identities = 15/52 (28%), Positives = 22/52 (42%)
Frame = +2
Query: 59 STDSRATTVHAKPFSTSVLQGPRWSICYYHQDLHRRRLQAGSRPDPSALSVA 214
S+ S A++ A P + + P ++HQ H LQ P P L A
Sbjct: 125 SSSSAASSTSAPPLRPLLPRPPHLHPAFHHQPFHHHLLQPQPPPPPPPLYYA 176
>05_02_0003 +
5520331-5520476,5520572-5520644,5520762-5520928,
5520929-5521223,5521531-5521674,5521756-5521890,
5522004-5522093,5523702-5523809,5523905-5523986,
5525362-5525417,5525888-5525986,5526090-5526394,
5526898-5527075,5527167-5527280,5527376-5527507,
5527614-5527718
Length = 742
Score = 27.9 bits (59), Expect = 9.0
Identities = 17/55 (30%), Positives = 29/55 (52%)
Frame = -3
Query: 485 RTGAVG*TKRSVKAPKKRSWDTMKGVGRS*QQDGGHGSRNPLRSVQRLTCRSNQP 321
+TG G KR +KA +K S+D + R QQ G + + + ++Q+ +S P
Sbjct: 267 KTGDFG--KRPIKAMEKLSYDAICSGARCIQQQGNNSNMSRSDALQQYHSKSFNP 319
>04_04_1376 +
33058306-33059763,33059851-33059991,33060594-33060644,
33061094-33061171,33061245-33061388,33061871-33062002
Length = 667
Score = 27.9 bits (59), Expect = 9.0
Identities = 20/52 (38%), Positives = 26/52 (50%), Gaps = 6/52 (11%)
Frame = +2
Query: 29 RHKISPXSLGSTDSRATTVHAK-PFST-----SVLQGPRWSICYYHQDLHRR 166
RH I S + D RATT+ P S+ S++ P S HQ+LHRR
Sbjct: 428 RHLIPEPSSWNVDGRATTIPGNVPSSSRANTNSMVNPPAGSPFIAHQNLHRR 479
>03_05_0543 - 25404630-25405408,25405461-25405605
Length = 307
Score = 27.9 bits (59), Expect = 9.0
Identities = 15/29 (51%), Positives = 17/29 (58%), Gaps = 3/29 (10%)
Frame = +1
Query: 145 PPRSAPTEAPSGLTP---RPFCALRRARP 222
PPR AP AP+ LTP + F A RR P
Sbjct: 155 PPRRAPAPAPAPLTPALSQRFLAERRPAP 183
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,765,127
Number of Sequences: 37544
Number of extensions: 367465
Number of successful extensions: 1156
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1130
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1156
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1968901276
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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