Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP15_T7_M15
         (790 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    27   2.3  
SPAC1142.06 |get3||GET complex ATPase subunit Get3 |Schizosaccha...    27   3.1  
SPAC458.03 |||nuclear telomere cap complex subunit |Schizosaccha...    26   7.1  

>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 27.5 bits (58), Expect = 2.3
 Identities = 10/20 (50%), Positives = 10/20 (50%)
 Frame = -3

Query: 737 GGXXXPPPXXXXGGXXPPPP 678
           GG   PPP     G  PPPP
Sbjct: 759 GGPPPPPPPPGVAGAGPPPP 778



 Score = 26.2 bits (55), Expect = 5.4
 Identities = 9/15 (60%), Positives = 9/15 (60%)
 Frame = -3

Query: 722 PPPXXXXGGXXPPPP 678
           PPP    GG  PPPP
Sbjct: 752 PPPAPIMGGPPPPPP 766


>SPAC1142.06 |get3||GET complex ATPase subunit Get3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 329

 Score = 27.1 bits (57), Expect = 3.1
 Identities = 15/40 (37%), Positives = 18/40 (45%)
 Frame = -2

Query: 204 KRGTNPKTALLSASIQASLPSSEIYRQLVDPRHVSSDSFG 85
           K G    T   S +IQ S   S +     DP H  SD+FG
Sbjct: 27  KGGVGKTTTSCSLAIQMSKVRSSVLLISTDPAHNLSDAFG 66


>SPAC458.03 |||nuclear telomere cap complex subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 868

 Score = 25.8 bits (54), Expect = 7.1
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = -1

Query: 142 LRDLPPVGRSSPCFFRLLWSLRKILIPYSSQFW 44
           L++L  +G  SPC  RL   L  +++P    FW
Sbjct: 21  LKELQHIGVPSPCNLRLYHELISVIVP---TFW 50


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,815,784
Number of Sequences: 5004
Number of extensions: 24301
Number of successful extensions: 60
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 50
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 55
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 383374054
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)