Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP15_T7_M06
(774 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_08_0817 - 20792817-20793360,20794061-20794156,20795193-20795296 46 3e-05
12_02_0090 + 13493311-13494180 30 1.8
03_04_0193 + 18344984-18345946 29 3.1
03_02_0574 + 9575496-9575517,9575636-9576418,9576754-9577163,957... 29 3.1
04_04_0765 - 27910189-27912393,27912521-27912598 29 4.1
02_03_0120 + 15463163-15465250 29 5.4
03_01_0206 - 1625020-1625619,1625722-1625931,1626054-1626094,162... 28 9.5
02_04_0657 + 24786717-24786924,24786925-24786965,24787379-247875... 28 9.5
01_06_0196 - 27410837-27413296 28 9.5
>10_08_0817 - 20792817-20793360,20794061-20794156,20795193-20795296
Length = 247
Score = 46.0 bits (104), Expect = 3e-05
Identities = 24/68 (35%), Positives = 34/68 (50%), Gaps = 2/68 (2%)
Frame = -1
Query: 378 EGRRCREC-KPGFFNLDLQNEFGCTPCFCFGHSSQ-CSSAPKYQVHDISAHFIRDSEKWD 205
E R C C KPG + NE C C GH ++ C + P + ++S H R+ K D
Sbjct: 120 EMRLCSNCYKPGHLAAECTNEKACNNCRKSGHLARNCPNEPVCNLCNVSGHLARECPKSD 179
Query: 204 AVDETGKP 181
A++E G P
Sbjct: 180 AINERGGP 187
>12_02_0090 + 13493311-13494180
Length = 289
Score = 30.3 bits (65), Expect = 1.8
Identities = 19/52 (36%), Positives = 30/52 (57%), Gaps = 1/52 (1%)
Frame = -2
Query: 440 RTATPLSAT-RRPVSVCANRTSRADAVGSASPASSI*IYRTSLDAHPASASA 288
+ ATP+ AT RRP +V A T A + +A ++I + T+ PA+AS+
Sbjct: 67 QAATPIPATTRRPSAVVATSTPTAPSQTTAPSLATILVPATTSAPKPATASS 118
>03_04_0193 + 18344984-18345946
Length = 320
Score = 29.5 bits (63), Expect = 3.1
Identities = 20/73 (27%), Positives = 36/73 (49%)
Frame = -2
Query: 455 VTSPGRTATPLSATRRPVSVCANRTSRADAVGSASPASSI*IYRTSLDAHPASASAIRPS 276
V S G+ ++ PV A R R+D++ A+ ASS + + D+ AS+S+ S
Sbjct: 57 VFSDGKLLPLRLSSANPVEAAALRLLRSDSLDGATTASSASGFSSRSDSRSASSSSSSSS 116
Query: 275 AVQLRNTRFTISA 237
V ++ + S+
Sbjct: 117 CVSRSTSQKSASS 129
>03_02_0574 +
9575496-9575517,9575636-9576418,9576754-9577163,
9577246-9578079
Length = 682
Score = 29.5 bits (63), Expect = 3.1
Identities = 25/85 (29%), Positives = 38/85 (44%), Gaps = 1/85 (1%)
Frame = -2
Query: 446 PGRTATPLSATRRPVSVCANRTSRADAVGSASPASSI*IYRTSLDAHPASASAIRPSAVQ 267
P +P A RRP V ++ R D +ASP+ S + S ++ S RP V
Sbjct: 29 PALDLSPPRAVRRPGLVMSHSGKRLDQSPAASPSPSRPVLVMSHSSNRLDQSPARPVLVM 88
Query: 266 LRNT-RFTISALISFETRRSGMLLM 195
R++ R S S + R +L+M
Sbjct: 89 SRSSNRLDQSPASSPASSRGPVLVM 113
>04_04_0765 - 27910189-27912393,27912521-27912598
Length = 760
Score = 29.1 bits (62), Expect = 4.1
Identities = 34/122 (27%), Positives = 49/122 (40%), Gaps = 3/122 (2%)
Frame = -2
Query: 611 LATVTPTGXSKPFNAMQKAKCQCKPGVTRGQV*RLCAEPLRVYEPKDASL--AAVTSPGR 438
LA TG +A+ + P V G A+ P A + AAV + G
Sbjct: 352 LALPDATGSPAAADAVTASPVDVVPPVDAGSP---AADVATTCSPAAAGMPAAAVAAAGS 408
Query: 437 TATPLSATRRPVSVCANRTSRADAVGSASPASS-I*IYRTSLDAHPASASAIRPSAVQLR 261
TA + A PV+ A +S S+SPA+S + I S A A+ P+ V
Sbjct: 409 TAPAVVAPDSPVAAVAVFSSPTAVAASSSPAASPVDIVAASSSPAAAVAAFGSPAVVVAS 468
Query: 260 NT 255
N+
Sbjct: 469 NS 470
>02_03_0120 + 15463163-15465250
Length = 695
Score = 28.7 bits (61), Expect = 5.4
Identities = 19/45 (42%), Positives = 26/45 (57%)
Frame = -2
Query: 542 KPGVTRGQV*RLCAEPLRVYEPKDASLAAVTSPGRTATPLSATRR 408
+ GV G+ L +EP+R+ P+DA AA S R ATP S + R
Sbjct: 68 RDGVGAGRA--LFSEPVRLLLPQDA--AASASASRAATPASFSTR 108
>03_01_0206 -
1625020-1625619,1625722-1625931,1626054-1626094,
1626185-1626234,1626345-1626433,1626534-1626608,
1626721-1626806,1626896-1626956,1627090-1627206,
1627308-1627549,1627983-1628040,1628162-1628284
Length = 583
Score = 27.9 bits (59), Expect = 9.5
Identities = 18/54 (33%), Positives = 22/54 (40%)
Frame = +1
Query: 487 TRNGSAHRRHTCPLVTPGLHWHLAFCIALKGFXKPVGVTVARQTXVFGTLGKNS 648
T S +RH TPGL W +AF G V RQ + L +NS
Sbjct: 208 THQTSFVKRHLGLSSTPGLRWIVAFFRQFFGSVTKVDYLTMRQGFINAHLSQNS 261
>02_04_0657 +
24786717-24786924,24786925-24786965,24787379-24787521,
24787597-24787774,24788054-24788123,24788197-24788345,
24788491-24788586,24789213-24789283,24789879-24789940,
24790175-24790238,24790326-24790410,24790515-24790641,
24790714-24790775,24790863-24790923,24790987-24791147,
24791355-24791648
Length = 623
Score = 27.9 bits (59), Expect = 9.5
Identities = 21/59 (35%), Positives = 29/59 (49%), Gaps = 1/59 (1%)
Frame = -2
Query: 440 RTATPLSATRRPVSVCAN-RTSRADAVGSASPASSI*IYRTSLDAHPASASAIRPSAVQ 267
+TA L RRP S N TSR + S+ P+S I + P S+ + RPS +Q
Sbjct: 525 KTAVDLDK-RRPTSSSRNGSTSRKALLSSSRPSSGDPIDPNRSNLIPTSSGSSRPSTMQ 582
>01_06_0196 - 27410837-27413296
Length = 819
Score = 27.9 bits (59), Expect = 9.5
Identities = 15/37 (40%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
Frame = -1
Query: 369 RCRECKPGFFNLDLQN-EFGCTPCFCFGHSSQCSSAP 262
RC C PG+ +D ++ GC P F G+ SQ S+ P
Sbjct: 302 RC-SCLPGYEMVDRRDWRRGCKPTFPVGNCSQGSAPP 337
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,496,649
Number of Sequences: 37544
Number of extensions: 452014
Number of successful extensions: 1311
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1265
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1308
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2068401984
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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