Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP15_T7_M03
         (767 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

M25772-1|AAA53372.1|  317|Drosophila melanogaster DNA repair pro...   210   2e-54
BT021447-1|AAX33595.1|  317|Drosophila melanogaster GH01513p pro...   210   2e-54
AY075528-1|AAL68335.1|  317|Drosophila melanogaster RE74511p pro...   210   2e-54
AE014296-3653|AAF51807.1|  317|Drosophila melanogaster CG7490-PA...   210   2e-54
X04132-4|CAA27750.1| 1237|Drosophila melanogaster protein ( Dros...    31   1.7  
AY928609-2|AAX28841.1| 1000|Drosophila melanogaster RNA-dependen...    31   1.7  

>M25772-1|AAA53372.1|  317|Drosophila melanogaster DNA repair
           protein protein.
          Length = 317

 Score =  210 bits (513), Expect = 2e-54
 Identities = 114/204 (55%), Positives = 127/204 (62%), Gaps = 1/204 (0%)
 Frame = -2

Query: 733 GAMPHCQLSFPPTTPAWVQRKXXFSRLFXSLPRFQRGTIEIINDVHILKPGDKVGASEAT 554
           GA+    +  P         K  F +      +  +GTIEIINDV ILKPGDKVGASEAT
Sbjct: 114 GAIAPLHVIIPAQNTGLGPEKTSFFQALSIPTKISKGTIEIINDVPILKPGDKVGASEAT 173

Query: 553 LLNMLNISPFSYGLVVKQVYDSGTIFAPEILDIKPEDLRAKFQAGVANVAALSLAIGYPT 374
           LLNMLNISPFSYGL+V QVYDSG+IF+PEILDIKPEDLRAKFQ GVAN+AA+ L++GYPT
Sbjct: 174 LLNMLNISPFSYGLIVNQVYDSGSIFSPEILDIKPEDLRAKFQQGVANLAAVCLSVGYPT 233

Query: 373 IASAPHSIANGFKNLLXXXXXXXXXXXXXXXIKEFIKDPSKF-XXXXXXXXXXXXXXXXX 197
           IASAPHSIANGFKNLL               IKE+IKDPSKF                  
Sbjct: 234 IASAPHSIANGFKNLLAIAATTEVEFKEATTIKEYIKDPSKFAAAASASAAPAAGGATEK 293

Query: 196 XXXXXXXXXXXXXSDDDMGFGLFD 125
                         DDDMGFGLFD
Sbjct: 294 KEEAKKPESESEEEDDDMGFGLFD 317


>BT021447-1|AAX33595.1|  317|Drosophila melanogaster GH01513p
           protein.
          Length = 317

 Score =  210 bits (513), Expect = 2e-54
 Identities = 114/204 (55%), Positives = 127/204 (62%), Gaps = 1/204 (0%)
 Frame = -2

Query: 733 GAMPHCQLSFPPTTPAWVQRKXXFSRLFXSLPRFQRGTIEIINDVHILKPGDKVGASEAT 554
           GA+    +  P         K  F +      +  +GTIEIINDV ILKPGDKVGASEAT
Sbjct: 114 GAIAPLHVIIPAQNTGLGPEKTSFFQALSIPTKISKGTIEIINDVPILKPGDKVGASEAT 173

Query: 553 LLNMLNISPFSYGLVVKQVYDSGTIFAPEILDIKPEDLRAKFQAGVANVAALSLAIGYPT 374
           LLNMLNISPFSYGL+V QVYDSG+IF+PEILDIKPEDLRAKFQ GVAN+AA+ L++GYPT
Sbjct: 174 LLNMLNISPFSYGLIVNQVYDSGSIFSPEILDIKPEDLRAKFQQGVANLAAVCLSVGYPT 233

Query: 373 IASAPHSIANGFKNLLXXXXXXXXXXXXXXXIKEFIKDPSKF-XXXXXXXXXXXXXXXXX 197
           IASAPHSIANGFKNLL               IKE+IKDPSKF                  
Sbjct: 234 IASAPHSIANGFKNLLAIAATTEVEFKEATTIKEYIKDPSKFAAAASASAAPAAGGATEK 293

Query: 196 XXXXXXXXXXXXXSDDDMGFGLFD 125
                         DDDMGFGLFD
Sbjct: 294 KEEAKKPESESEEEDDDMGFGLFD 317


>AY075528-1|AAL68335.1|  317|Drosophila melanogaster RE74511p
           protein.
          Length = 317

 Score =  210 bits (513), Expect = 2e-54
 Identities = 114/204 (55%), Positives = 127/204 (62%), Gaps = 1/204 (0%)
 Frame = -2

Query: 733 GAMPHCQLSFPPTTPAWVQRKXXFSRLFXSLPRFQRGTIEIINDVHILKPGDKVGASEAT 554
           GA+    +  P         K  F +      +  +GTIEIINDV ILKPGDKVGASEAT
Sbjct: 114 GAIAPLHVIIPAQNTGLGPEKTSFFQALSIPTKISKGTIEIINDVPILKPGDKVGASEAT 173

Query: 553 LLNMLNISPFSYGLVVKQVYDSGTIFAPEILDIKPEDLRAKFQAGVANVAALSLAIGYPT 374
           LLNMLNISPFSYGL+V QVYDSG+IF+PEILDIKPEDLRAKFQ GVAN+AA+ L++GYPT
Sbjct: 174 LLNMLNISPFSYGLIVNQVYDSGSIFSPEILDIKPEDLRAKFQQGVANLAAVCLSVGYPT 233

Query: 373 IASAPHSIANGFKNLLXXXXXXXXXXXXXXXIKEFIKDPSKF-XXXXXXXXXXXXXXXXX 197
           IASAPHSIANGFKNLL               IKE+IKDPSKF                  
Sbjct: 234 IASAPHSIANGFKNLLAIAATTEVEFKEATTIKEYIKDPSKFAAAASASAAPAAGGATEK 293

Query: 196 XXXXXXXXXXXXXSDDDMGFGLFD 125
                         DDDMGFGLFD
Sbjct: 294 KEEAKKPESESEEEDDDMGFGLFD 317


>AE014296-3653|AAF51807.1|  317|Drosophila melanogaster CG7490-PA
           protein.
          Length = 317

 Score =  210 bits (513), Expect = 2e-54
 Identities = 114/204 (55%), Positives = 127/204 (62%), Gaps = 1/204 (0%)
 Frame = -2

Query: 733 GAMPHCQLSFPPTTPAWVQRKXXFSRLFXSLPRFQRGTIEIINDVHILKPGDKVGASEAT 554
           GA+    +  P         K  F +      +  +GTIEIINDV ILKPGDKVGASEAT
Sbjct: 114 GAIAPLHVIIPAQNTGLGPEKTSFFQALSIPTKISKGTIEIINDVPILKPGDKVGASEAT 173

Query: 553 LLNMLNISPFSYGLVVKQVYDSGTIFAPEILDIKPEDLRAKFQAGVANVAALSLAIGYPT 374
           LLNMLNISPFSYGL+V QVYDSG+IF+PEILDIKPEDLRAKFQ GVAN+AA+ L++GYPT
Sbjct: 174 LLNMLNISPFSYGLIVNQVYDSGSIFSPEILDIKPEDLRAKFQQGVANLAAVCLSVGYPT 233

Query: 373 IASAPHSIANGFKNLLXXXXXXXXXXXXXXXIKEFIKDPSKF-XXXXXXXXXXXXXXXXX 197
           IASAPHSIANGFKNLL               IKE+IKDPSKF                  
Sbjct: 234 IASAPHSIANGFKNLLAIAATTEVEFKEATTIKEYIKDPSKFAAAASASAAPAAGGATEK 293

Query: 196 XXXXXXXXXXXXXSDDDMGFGLFD 125
                         DDDMGFGLFD
Sbjct: 294 KEEAKKPESESEEEDDDMGFGLFD 317


>X04132-4|CAA27750.1| 1237|Drosophila melanogaster protein (
            Drosophila retrotransposon412 genome. ).
          Length = 1237

 Score = 31.1 bits (67), Expect = 1.7
 Identities = 27/103 (26%), Positives = 49/103 (47%), Gaps = 2/103 (1%)
 Frame = -2

Query: 631  QRGTIEIINDVHILK--PGDKVGASEATLLNMLNISPFSYGLVVKQVYDSGTIFAPEILD 458
            Q+ T EI ++ ++ +    D+V       LN  +I  F +G  +   YD G ++   ILD
Sbjct: 770  QKQTKEIASEPNVYEVITNDEVRKVVTLQLND-SICLFKHGKKIIARYDVGDLYTNGILD 828

Query: 457  IKPEDLRAKFQAGVANVAALSLAIGYPTIASAPHSIANGFKNL 329
            +     R + QAG+ +++ + +A   P      H   + FKN+
Sbjct: 829  LDQFLQRLELQAGIYDISQIKMA---PWKKIFEHVSIDKFKNM 868


>AY928609-2|AAX28841.1| 1000|Drosophila melanogaster RNA-dependent
           DNA polymerase protein.
          Length = 1000

 Score = 31.1 bits (67), Expect = 1.7
 Identities = 27/103 (26%), Positives = 49/103 (47%), Gaps = 2/103 (1%)
 Frame = -2

Query: 631 QRGTIEIINDVHILK--PGDKVGASEATLLNMLNISPFSYGLVVKQVYDSGTIFAPEILD 458
           Q+ T EI ++ ++ +    D+V       LN  +I  F +G  +   YD G ++   ILD
Sbjct: 533 QKQTKEIASEPNVYEVITNDEVRKVVTLQLND-SICLFKHGKKIIARYDVGDLYTNGILD 591

Query: 457 IKPEDLRAKFQAGVANVAALSLAIGYPTIASAPHSIANGFKNL 329
           +     R + QAG+ +++ + +A   P      H   + FKN+
Sbjct: 592 LDQFLQRLELQAGIYDISQIKMA---PWKKIFEHVSIDKFKNM 631


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 29,800,640
Number of Sequences: 53049
Number of extensions: 576149
Number of successful extensions: 1271
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1239
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1259
length of database: 24,988,368
effective HSP length: 83
effective length of database: 20,585,301
effective search space used: 3540671772
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)