Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP15_T7_L16
         (1221 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    36   0.011
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    34   0.035
SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein Cap1|S...    27   4.0  
SPBC83.01 |ucp8||UBA/EH/EF hand domain protein Ucp8|Schizosaccha...    27   7.0  
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    26   9.2  

>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 35.9 bits (79), Expect = 0.011
 Identities = 12/20 (60%), Positives = 13/20 (65%)
 Frame = -1

Query: 615 PPPPPPXXXXXKKXPPPPPP 556
           PPPPPP      + PPPPPP
Sbjct: 11  PPPPPPGFEPPSQPPPPPPP 30



 Score = 35.1 bits (77), Expect = 0.020
 Identities = 12/20 (60%), Positives = 12/20 (60%)
 Frame = -1

Query: 615 PPPPPPXXXXXKKXPPPPPP 556
           PPPPPP        PPPPPP
Sbjct: 10  PPPPPPPGFEPPSQPPPPPP 29



 Score = 31.5 bits (68), Expect = 0.25
 Identities = 11/20 (55%), Positives = 11/20 (55%)
 Frame = -1

Query: 615 PPPPPPXXXXXKKXPPPPPP 556
           PPPPPP         PPPPP
Sbjct: 9   PPPPPPPPGFEPPSQPPPPP 28



 Score = 23.8 bits (49), Expect(2) = 2.8
 Identities = 7/7 (100%), Positives = 7/7 (100%)
 Frame = +1

Query: 835 PPPPPPP 855
           PPPPPPP
Sbjct: 24  PPPPPPP 30



 Score = 22.2 bits (45), Expect(2) = 2.8
 Identities = 7/10 (70%), Positives = 7/10 (70%)
 Frame = +1

Query: 823 GXXXPPPPPP 852
           G   PPPPPP
Sbjct: 7   GNPPPPPPPP 16


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 34.3 bits (75), Expect = 0.035
 Identities = 12/20 (60%), Positives = 12/20 (60%)
 Frame = -1

Query: 615 PPPPPPXXXXXKKXPPPPPP 556
           PPPPPP        PPPPPP
Sbjct: 761 PPPPPPPPGVAGAGPPPPPP 780



 Score = 34.3 bits (75), Expect = 0.035
 Identities = 12/20 (60%), Positives = 12/20 (60%)
 Frame = -1

Query: 615 PPPPPPXXXXXKKXPPPPPP 556
           PPPPPP        PPPPPP
Sbjct: 762 PPPPPPPGVAGAGPPPPPPP 781



 Score = 34.3 bits (75), Expect = 0.035
 Identities = 12/20 (60%), Positives = 12/20 (60%)
 Frame = -1

Query: 615 PPPPPPXXXXXKKXPPPPPP 556
           PPPPPP        PPPPPP
Sbjct: 763 PPPPPPGVAGAGPPPPPPPP 782



 Score = 31.1 bits (67), Expect = 0.32
 Identities = 11/20 (55%), Positives = 11/20 (55%)
 Frame = -1

Query: 615 PPPPPPXXXXXKKXPPPPPP 556
           PPPPP         PPPPPP
Sbjct: 764 PPPPPGVAGAGPPPPPPPPP 783



 Score = 27.9 bits (59), Expect = 3.0
 Identities = 10/19 (52%), Positives = 10/19 (52%)
 Frame = -1

Query: 612 PPPPPXXXXXKKXPPPPPP 556
           P PPP        PPPPPP
Sbjct: 750 PVPPPAPIMGGPPPPPPPP 768



 Score = 26.2 bits (55), Expect = 9.2
 Identities = 10/20 (50%), Positives = 10/20 (50%)
 Frame = -1

Query: 615 PPPPPPXXXXXKKXPPPPPP 556
           P P PP        PPPPPP
Sbjct: 748 PIPVPPPAPIMGGPPPPPPP 767



 Score = 26.2 bits (55), Expect = 9.2
 Identities = 9/15 (60%), Positives = 9/15 (60%)
 Frame = +1

Query: 811 GGGGGXXXPPPPPPP 855
           G  G    PPPPPPP
Sbjct: 769 GVAGAGPPPPPPPPP 783


>SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein
           Cap1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 551

 Score = 27.5 bits (58), Expect = 4.0
 Identities = 9/12 (75%), Positives = 9/12 (75%)
 Frame = +1

Query: 820 GGXXXPPPPPPP 855
           GG   PPPPPPP
Sbjct: 303 GGLPPPPPPPPP 314


>SPBC83.01 |ucp8||UBA/EH/EF hand domain protein
           Ucp8|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 884

 Score = 26.6 bits (56), Expect = 7.0
 Identities = 10/20 (50%), Positives = 10/20 (50%)
 Frame = -1

Query: 615 PPPPPPXXXXXKKXPPPPPP 556
           P PP P      K  PPPPP
Sbjct: 729 PAPPTPAPTPAVKHHPPPPP 748


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 26.2 bits (55), Expect = 9.2
 Identities = 13/27 (48%), Positives = 13/27 (48%), Gaps = 7/27 (25%)
 Frame = -1

Query: 615 PPPPPPXXXXX-------KKXPPPPPP 556
           PP PPP            KK PPPPPP
Sbjct: 290 PPLPPPSSRVSAAALAANKKRPPPPPP 316



 Score = 26.2 bits (55), Expect = 9.2
 Identities = 9/18 (50%), Positives = 9/18 (50%)
 Frame = -3

Query: 613 PPPPPPXXXXKKXXPPPP 560
           PPPPPP         PPP
Sbjct: 361 PPPPPPRSAPSTGRQPPP 378


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,388,134
Number of Sequences: 5004
Number of extensions: 17917
Number of successful extensions: 445
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 28
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 187
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 661404424
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)