Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP15_T7_L12
         (1361 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    30   0.85 
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    28   2.6  
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    28   3.4  

>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 29.9 bits (64), Expect = 0.85
 Identities = 28/133 (21%), Positives = 35/133 (26%), Gaps = 5/133 (3%)
 Frame = +3

Query: 717  GFXXVPPPXXGXPPLXSXPXLFPXLXLPPATHXSRKXXXSPXXXSXXXXXPIXPXXXLFX 896
            G   VP P    PP+       P +  P       K   +          P  P   +  
Sbjct: 1090 GIPPVPKPSVAAPPVPKPSVAVPPVPAPSGAPPVPKPSVAAPPVPVPSGAPPVPKPSVAA 1149

Query: 897  XXXPPSAXXXXXXSPX---PMILKPXXXKXPQPPPLXXX--CXPPPKIPXXXXXFXXXXP 1061
               P  +       P    P +  P     P P P        PP + P          P
Sbjct: 1150 PPVPAPSGAPPVPKPSVAAPPVPAPSSGIPPVPKPAAGVPPVPPPSEAPPVPKPSVGVPP 1209

Query: 1062 AXXSSTIPXVPXP 1100
                ST P VP P
Sbjct: 1210 VPPPSTAPPVPTP 1222


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 28.3 bits (60), Expect = 2.6
 Identities = 16/53 (30%), Positives = 18/53 (33%), Gaps = 1/53 (1%)
 Frame = +3

Query: 945  PMILKPXXXKXPQPPPLXXXCXPPPKI-PXXXXXFXXXXPAXXSSTIPXVPXP 1100
            P    P     P PPP      PPP   P          P   +S+ P VP P
Sbjct: 1694 PQSAAPPQMSAPTPPPPPMSVPPPPSAPPMPAGPPSAPPPPLPASSAPSVPNP 1746


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 574

 Score = 27.9 bits (59), Expect = 3.4
 Identities = 18/65 (27%), Positives = 22/65 (33%)
 Frame = +3

Query: 906  PPSAXXXXXXSPXPMILKPXXXKXPQPPPLXXXCXPPPKIPXXXXXFXXXXPAXXSSTIP 1085
            PPS          P +  P     P PPP       PP  P          PA  S++ P
Sbjct: 233  PPSIPSSRPPERVPSLSAPAPP--PIPPPSNGTVSSPPNSPPRPIAPVSMNPAINSTSKP 290

Query: 1086 XVPXP 1100
             +P P
Sbjct: 291  PLPPP 295


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,993,067
Number of Sequences: 5004
Number of extensions: 20035
Number of successful extensions: 42
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 37
length of database: 2,362,478
effective HSP length: 75
effective length of database: 1,987,178
effective search space used: 751153284
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)