Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP15_T7_L12
         (1361 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81053-1|CAB02877.1|  385|Caenorhabditis elegans Hypothetical pr...    36   0.088
Z12018-1|CAD88219.2|  774|Caenorhabditis elegans Hypothetical pr...    35   0.15 
Z11126-8|CAD88221.2|  774|Caenorhabditis elegans Hypothetical pr...    35   0.15 
Z77655-1|CAB01137.1|  393|Caenorhabditis elegans Hypothetical pr...    32   1.1  
Z54238-1|CAA90992.2|  281|Caenorhabditis elegans Hypothetical pr...    30   3.3  
U58755-7|AAB00696.1|  136|Caenorhabditis elegans Hypothetical pr...    30   4.4  
U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def...    29   5.8  
U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def...    29   5.8  
AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.    29   5.8  
AF038613-8|AAL02515.2|  309|Caenorhabditis elegans Human hnrnp a...    29   7.6  
AF038613-6|ABB51186.1|  347|Caenorhabditis elegans Human hnrnp a...    29   7.6  

>Z81053-1|CAB02877.1|  385|Caenorhabditis elegans Hypothetical
           protein E02A10.2 protein.
          Length = 385

 Score = 35.5 bits (78), Expect = 0.088
 Identities = 21/57 (36%), Positives = 21/57 (36%)
 Frame = -3

Query: 600 GGGGXXXXXEXGXXXXCXXXXXXXGXGXGGGXXXXGVGXRGGEGXXDXXXGXXGCGG 430
           GGGG       G    C       G G GGG    G G  GG G      G  GCGG
Sbjct: 125 GGGGCGGGCGGGGGGGCGGGGGG-GCGGGGGGCGGGGGGCGGGGGGCGGGGGGGCGG 180



 Score = 33.9 bits (74), Expect = 0.27
 Identities = 19/57 (33%), Positives = 19/57 (33%)
 Frame = -3

Query: 600 GGGGXXXXXEXGXXXXCXXXXXXXGXGXGGGXXXXGVGXRGGEGXXDXXXGXXGCGG 430
           GGG             C       G G GGG    G G  GG G      G  GCGG
Sbjct: 102 GGGCGGGCAPPPPPPACGGGCGGGGGGCGGGCGGGGGGGCGGGGGGGCGGGGGGCGG 158



 Score = 33.5 bits (73), Expect = 0.35
 Identities = 20/56 (35%), Positives = 20/56 (35%)
 Frame = -3

Query: 597 GGGXXXXXEXGXXXXCXXXXXXXGXGXGGGXXXXGVGXRGGEGXXDXXXGXXGCGG 430
           GGG       G    C       G G GGG    G G  GG G      G  GCGG
Sbjct: 134 GGGGGGGCGGGGGGGCGGGGGGCGGG-GGGCGGGGGGCGGGGGGGCGGGGGGGCGG 188



 Score = 30.7 bits (66), Expect = 2.5
 Identities = 18/57 (31%), Positives = 18/57 (31%)
 Frame = -3

Query: 600 GGGGXXXXXEXGXXXXCXXXXXXXGXGXGGGXXXXGVGXRGGEGXXDXXXGXXGCGG 430
           GGG             C       G G GGG    G G   G G      G  GCGG
Sbjct: 45  GGGCGGGCAPPPPPPACGGGCGGGGGGCGGGGGGCGGGGGCGGGGGGCGGGGGGCGG 101


>Z12018-1|CAD88219.2|  774|Caenorhabditis elegans Hypothetical
           protein ZK643.8 protein.
          Length = 774

 Score = 34.7 bits (76), Expect = 0.15
 Identities = 20/57 (35%), Positives = 20/57 (35%)
 Frame = -3

Query: 600 GGGGXXXXXEXGXXXXCXXXXXXXGXGXGGGXXXXGVGXRGGEGXXDXXXGXXGCGG 430
           GGGG       G            G G GGG    G G  GG G      G  GCGG
Sbjct: 85  GGGGGCGGGGGGCGGGGGCGGGGGGCGGGGGGCGGGGGGCGGGGGGCGGGGGGGCGG 141



 Score = 33.5 bits (73), Expect = 0.35
 Identities = 19/57 (33%), Positives = 19/57 (33%)
 Frame = -3

Query: 600 GGGGXXXXXEXGXXXXCXXXXXXXGXGXGGGXXXXGVGXRGGEGXXDXXXGXXGCGG 430
           GGG        G    C       G G GGG    G G  G  G      G  GCGG
Sbjct: 56  GGGCGGGGGGCGGGGGCAPPPAPCGGGCGGGGGGCGGGGGGCGGGGGCGGGGGGCGG 112



 Score = 31.9 bits (69), Expect = 1.1
 Identities = 20/59 (33%), Positives = 20/59 (33%), Gaps = 2/59 (3%)
 Frame = -3

Query: 600 GGGGXXXXXEXGXXXXCXXXXXXXGXGX--GGGXXXXGVGXRGGEGXXDXXXGXXGCGG 430
           GGGG       G            G G   GGG    G G  GG G      G  GCGG
Sbjct: 135 GGGGCGGGSSGGCGGGSSGGCGGGGGGGCGGGGGGGCGGGSSGGGGYAVAPSGGGGCGG 193



 Score = 31.1 bits (67), Expect = 1.9
 Identities = 20/60 (33%), Positives = 20/60 (33%), Gaps = 3/60 (5%)
 Frame = -3

Query: 600 GGGGXXXXXEXGXXXX---CXXXXXXXGXGXGGGXXXXGVGXRGGEGXXDXXXGXXGCGG 430
           GGGG       G       C       G G GGG    G G   G G      G  GCGG
Sbjct: 60  GGGGGGCGGGGGCAPPPAPCGGGCGGGGGGCGGGGGGCGGGGGCGGGGGGCGGGGGGCGG 119


>Z11126-8|CAD88221.2|  774|Caenorhabditis elegans Hypothetical
           protein ZK643.8 protein.
          Length = 774

 Score = 34.7 bits (76), Expect = 0.15
 Identities = 20/57 (35%), Positives = 20/57 (35%)
 Frame = -3

Query: 600 GGGGXXXXXEXGXXXXCXXXXXXXGXGXGGGXXXXGVGXRGGEGXXDXXXGXXGCGG 430
           GGGG       G            G G GGG    G G  GG G      G  GCGG
Sbjct: 85  GGGGGCGGGGGGCGGGGGCGGGGGGCGGGGGGCGGGGGGCGGGGGGCGGGGGGGCGG 141



 Score = 33.5 bits (73), Expect = 0.35
 Identities = 19/57 (33%), Positives = 19/57 (33%)
 Frame = -3

Query: 600 GGGGXXXXXEXGXXXXCXXXXXXXGXGXGGGXXXXGVGXRGGEGXXDXXXGXXGCGG 430
           GGG        G    C       G G GGG    G G  G  G      G  GCGG
Sbjct: 56  GGGCGGGGGGCGGGGGCAPPPAPCGGGCGGGGGGCGGGGGGCGGGGGCGGGGGGCGG 112



 Score = 31.9 bits (69), Expect = 1.1
 Identities = 20/59 (33%), Positives = 20/59 (33%), Gaps = 2/59 (3%)
 Frame = -3

Query: 600 GGGGXXXXXEXGXXXXCXXXXXXXGXGX--GGGXXXXGVGXRGGEGXXDXXXGXXGCGG 430
           GGGG       G            G G   GGG    G G  GG G      G  GCGG
Sbjct: 135 GGGGCGGGSSGGCGGGSSGGCGGGGGGGCGGGGGGGCGGGSSGGGGYAVAPSGGGGCGG 193



 Score = 31.1 bits (67), Expect = 1.9
 Identities = 20/60 (33%), Positives = 20/60 (33%), Gaps = 3/60 (5%)
 Frame = -3

Query: 600 GGGGXXXXXEXGXXXX---CXXXXXXXGXGXGGGXXXXGVGXRGGEGXXDXXXGXXGCGG 430
           GGGG       G       C       G G GGG    G G   G G      G  GCGG
Sbjct: 60  GGGGGGCGGGGGCAPPPAPCGGGCGGGGGGCGGGGGGCGGGGGCGGGGGGCGGGGGGCGG 119


>Z77655-1|CAB01137.1|  393|Caenorhabditis elegans Hypothetical
           protein C56A3.1 protein.
          Length = 393

 Score = 31.9 bits (69), Expect = 1.1
 Identities = 15/33 (45%), Positives = 15/33 (45%)
 Frame = -3

Query: 528 GXGXGGGXXXXGVGXRGGEGXXDXXXGXXGCGG 430
           G G GGG    G G  GG G      G  GCGG
Sbjct: 94  GCGGGGGGCGGGGGCGGGGGGGCGGGGGGGCGG 126


>Z54238-1|CAA90992.2|  281|Caenorhabditis elegans Hypothetical
           protein T28C6.1 protein.
          Length = 281

 Score = 30.3 bits (65), Expect = 3.3
 Identities = 14/38 (36%), Positives = 14/38 (36%)
 Frame = -3

Query: 522 GXGGGXXXXGVGXRGGEGXXDXXXGXXGCGGWAXXRXG 409
           G GGG      G RGG G         G GGW     G
Sbjct: 62  GSGGGRGGGSGGGRGGSGGAGAGGSGSGSGGWGGQDGG 99



 Score = 29.5 bits (63), Expect = 5.8
 Identities = 14/33 (42%), Positives = 14/33 (42%)
 Frame = -3

Query: 528 GXGXGGGXXXXGVGXRGGEGXXDXXXGXXGCGG 430
           G G GGG    G G  GG G      G  G GG
Sbjct: 53  GGGRGGGRGGSGGGRGGGSGGGRGGSGGAGAGG 85


>U58755-7|AAB00696.1|  136|Caenorhabditis elegans Hypothetical
           protein C34D4.11 protein.
          Length = 136

 Score = 29.9 bits (64), Expect = 4.4
 Identities = 19/66 (28%), Positives = 19/66 (28%)
 Frame = -3

Query: 606 WHGGGGXXXXXEXGXXXXCXXXXXXXGXGXGGGXXXXGVGXRGGEGXXDXXXGXXGCGGW 427
           W GGG        G              G GG     G G  GG G      G  G GG 
Sbjct: 48  WGGGGPGWGRGGGGSGWGGGRGGGWGNNGGGGNWGGNGGGGNGGGGRGGGGGGGGGRGGG 107

Query: 426 AXXRXG 409
              R G
Sbjct: 108 GGGRGG 113


>U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect
            protein 1, isoformb protein.
          Length = 1437

 Score = 29.5 bits (63), Expect = 5.8
 Identities = 13/30 (43%), Positives = 13/30 (43%)
 Frame = +3

Query: 939  PXPMILKPXXXKXPQPPPLXXXCXPPPKIP 1028
            P P  L P     P PPP    C PPP  P
Sbjct: 746  PPPGGLPPISGGPPPPPPPPGGCPPPPPPP 775


>U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect
            protein 1, isoforma protein.
          Length = 1435

 Score = 29.5 bits (63), Expect = 5.8
 Identities = 13/30 (43%), Positives = 13/30 (43%)
 Frame = +3

Query: 939  PXPMILKPXXXKXPQPPPLXXXCXPPPKIP 1028
            P P  L P     P PPP    C PPP  P
Sbjct: 746  PPPGGLPPISGGPPPPPPPPGGCPPPPPPP 775


>AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.
          Length = 1018

 Score = 29.5 bits (63), Expect = 5.8
 Identities = 13/30 (43%), Positives = 13/30 (43%)
 Frame = +3

Query: 939  PXPMILKPXXXKXPQPPPLXXXCXPPPKIP 1028
            P P  L P     P PPP    C PPP  P
Sbjct: 329  PPPGGLPPISGGPPPPPPPPGGCPPPPPPP 358


>AF038613-8|AAL02515.2|  309|Caenorhabditis elegans Human hnrnp a1
           homolog protein1, isoform b protein.
          Length = 309

 Score = 29.1 bits (62), Expect = 7.6
 Identities = 19/66 (28%), Positives = 22/66 (33%), Gaps = 2/66 (3%)
 Frame = -3

Query: 600 GGGGXXXXXEXGXXXXCXXXXXXXGXGXGGGXXXXGVGXRGG--EGXXDXXXGXXGCGGW 427
           GGGG     + G              G GGG    G G +GG  +G         G GGW
Sbjct: 187 GGGGWGGPAQRGGPGAYGGPGGGGQGGYGGGNYGGGWGQQGGGGQGGWGGPQQQQGGGGW 246

Query: 426 AXXRXG 409
                G
Sbjct: 247 GQQGGG 252


>AF038613-6|ABB51186.1|  347|Caenorhabditis elegans Human hnrnp a1
           homolog protein1, isoform d protein.
          Length = 347

 Score = 29.1 bits (62), Expect = 7.6
 Identities = 19/66 (28%), Positives = 22/66 (33%), Gaps = 2/66 (3%)
 Frame = -3

Query: 600 GGGGXXXXXEXGXXXXCXXXXXXXGXGXGGGXXXXGVGXRGG--EGXXDXXXGXXGCGGW 427
           GGGG     + G              G GGG    G G +GG  +G         G GGW
Sbjct: 225 GGGGWGGPAQRGGPGAYGGPGGGGQGGYGGGNYGGGWGQQGGGGQGGWGGPQQQQGGGGW 284

Query: 426 AXXRXG 409
                G
Sbjct: 285 GQQGGG 290


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,711,896
Number of Sequences: 27780
Number of extensions: 193410
Number of successful extensions: 870
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 388
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 777
length of database: 12,740,198
effective HSP length: 84
effective length of database: 10,406,678
effective search space used: 3840064182
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)