Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP15_T7_L11
(986 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_01_0380 + 2978256-2979284 24 4.0
01_05_0490 + 22672241-22674679 29 4.3
01_01_0892 + 7037384-7037795,7038447-7038962,7039507-7039593,703... 25 5.0
03_03_0038 + 13984525-13984917,13985351-13985429,13985535-139856... 29 5.7
02_01_0458 + 3291563-3291733,3292082-3292769,3292847-3293363,329... 24 6.3
03_01_0219 + 1731267-1731728,1732148-1732235,1732330-1732417,173... 29 7.5
04_04_0137 - 23053148-23053798,23053911-23054146,23054268-230544... 23 8.1
10_02_0134 + 5667236-5669295,5669833-5669902,5670266-5670376 23 8.2
07_01_0021 - 133549-133628,133780-133824,133850-133858,134513-13... 28 10.0
>05_01_0380 + 2978256-2979284
Length = 342
Score = 24.2 bits (50), Expect(2) = 4.0
Identities = 7/14 (50%), Positives = 10/14 (71%)
Frame = +1
Query: 688 KKXKXPXPPPPXPP 729
++ + P PPPP PP
Sbjct: 21 ERVRMPPPPPPPPP 34
Score = 23.8 bits (49), Expect(2) = 4.0
Identities = 8/16 (50%), Positives = 9/16 (56%)
Frame = +1
Query: 703 PXPPPPXPPXXGXKKK 750
P PPPP PP +K
Sbjct: 32 PPPPPPPPPPRPFSRK 47
>01_05_0490 + 22672241-22674679
Length = 812
Score = 29.5 bits (63), Expect = 4.3
Identities = 10/19 (52%), Positives = 12/19 (63%)
Frame = +1
Query: 703 PXPPPPXPPXXGXKKKKKK 759
P PPPP PP + KKK+
Sbjct: 513 PPPPPPLPPATAPRSKKKR 531
Score = 28.3 bits (60), Expect = 10.0
Identities = 17/66 (25%), Positives = 21/66 (31%)
Frame = +1
Query: 553 PXXQKKKXXPXPXPPLXFLXXTPPKKXXVWXXFFXXKXXXXXXXKKKXKXPXPPPPXPPX 732
P + P P PP PP ++ F K P PPPP PP
Sbjct: 590 PDSTVRTTNPAPAPPRRPPPPPPPPPSSIFYNLFK-KGGSKSRRIHSVAPPQPPPPPPPT 648
Query: 733 XGXKKK 750
+K
Sbjct: 649 TRRSRK 654
>01_01_0892 +
7037384-7037795,7038447-7038962,7039507-7039593,
7039698-7039768,7040148-7040224,7040380-7040527,
7040973-7041134,7041374-7041694
Length = 597
Score = 24.6 bits (51), Expect(2) = 5.0
Identities = 8/12 (66%), Positives = 8/12 (66%)
Frame = +1
Query: 703 PXPPPPXPPXXG 738
P PPPP PP G
Sbjct: 127 PPPPPPPPPFKG 138
Score = 23.0 bits (47), Expect(2) = 5.0
Identities = 8/15 (53%), Positives = 9/15 (60%)
Frame = +1
Query: 685 KKKXKXPXPPPPXPP 729
KK+ PPPP PP
Sbjct: 103 KKRHHHHHPPPPPPP 117
>03_03_0038 +
13984525-13984917,13985351-13985429,13985535-13985628,
13985712-13985844
Length = 232
Score = 29.1 bits (62), Expect = 5.7
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = +1
Query: 688 KKXKXPXPPPPXPPXXGXKKKKKKK 762
++ + PPPP P G + KKKKK
Sbjct: 32 RRGEAKPPPPPPPQLRGGETKKKKK 56
>02_01_0458 +
3291563-3291733,3292082-3292769,3292847-3293363,
3293438-3293637,3294137-3294372,3294469-3295302
Length = 881
Score = 23.8 bits (49), Expect(2) = 6.3
Identities = 8/13 (61%), Positives = 8/13 (61%)
Frame = +1
Query: 691 KXKXPXPPPPXPP 729
K P PPPP PP
Sbjct: 350 KLMPPPPPPPPPP 362
Score = 23.4 bits (48), Expect(2) = 6.3
Identities = 9/17 (52%), Positives = 9/17 (52%)
Frame = +1
Query: 703 PXPPPPXPPXXGXKKKK 753
P PPPP PP KK
Sbjct: 366 PPPPPPRPPPPPPPIKK 382
>03_01_0219 +
1731267-1731728,1732148-1732235,1732330-1732417,
1732528-1732573,1732687-1732785,1734363-1734431,
1735706-1736036,1736123-1736256,1736400-1737251
Length = 722
Score = 28.7 bits (61), Expect = 7.5
Identities = 11/26 (42%), Positives = 14/26 (53%)
Frame = +1
Query: 685 KKKXKXPXPPPPXPPXXGXKKKKKKK 762
+K P PPPP PP ++K KK
Sbjct: 5 RKAAAAPPPPPPPPPAETPARRKGKK 30
>04_04_0137 -
23053148-23053798,23053911-23054146,23054268-23054458,
23054587-23056010
Length = 833
Score = 23.4 bits (48), Expect(2) = 8.1
Identities = 7/11 (63%), Positives = 8/11 (72%)
Frame = +1
Query: 697 KXPXPPPPXPP 729
+ P PPPP PP
Sbjct: 364 RPPPPPPPPPP 374
Score = 23.4 bits (48), Expect(2) = 8.1
Identities = 8/20 (40%), Positives = 11/20 (55%)
Frame = +1
Query: 703 PXPPPPXPPXXGXKKKKKKK 762
P PPPP PP +++ K
Sbjct: 368 PPPPPPPPPPPAVTQQQDVK 387
>10_02_0134 + 5667236-5669295,5669833-5669902,5670266-5670376
Length = 746
Score = 23.4 bits (48), Expect(2) = 8.2
Identities = 7/11 (63%), Positives = 8/11 (72%)
Frame = +1
Query: 697 KXPXPPPPXPP 729
+ P PPPP PP
Sbjct: 4 RQPPPPPPPPP 14
Score = 23.4 bits (48), Expect(2) = 8.2
Identities = 7/17 (41%), Positives = 10/17 (58%)
Frame = +1
Query: 703 PXPPPPXPPXXGXKKKK 753
P PPPP PP +++
Sbjct: 7 PPPPPPPPPRPDVARRR 23
>07_01_0021 -
133549-133628,133780-133824,133850-133858,134513-134656,
140098-140391,141324-141908,142034-142198,142364-142406
Length = 454
Score = 28.3 bits (60), Expect = 10.0
Identities = 18/49 (36%), Positives = 23/49 (46%), Gaps = 1/49 (2%)
Frame = +3
Query: 12 FLVTKEKXLGGY-PRLNPLGAPPPXGEFSXXKPGPGKPFENXXKPKXFG 155
F V +E+ G P+L+P G+P P F P P PF N P G
Sbjct: 24 FAVEEEEDGSGLMPQLSPTGSPNPLVPF--LAPAPLAPFFNTTPPNLSG 70
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,727,906
Number of Sequences: 37544
Number of extensions: 279491
Number of successful extensions: 3035
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1188
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2394
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2881826040
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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