Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP15_T7_L10
         (777 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    27   0.26 
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               21   9.7  
AF134816-1|AAD40232.1|   50|Apis mellifera unknown protein.            21   9.7  

>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 26.6 bits (56), Expect = 0.26
 Identities = 14/41 (34%), Positives = 24/41 (58%)
 Frame = -1

Query: 513 KDDDNKRSFCMYVLDPIYKVFDAIMKFKKEEIDDLLKKIGV 391
           KD+ NK+   +   + +YK+ D I    K+EI D+L ++ V
Sbjct: 546 KDEANKKGVSLRFYNVVYKLIDNI----KKEIYDILPEVDV 582


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 21.4 bits (43), Expect = 9.7
 Identities = 7/26 (26%), Positives = 13/26 (50%)
 Frame = -1

Query: 342 VVMRSWLPAGEALLQMIAIHLPSPVV 265
           +V  SW+P+    +Q      P P++
Sbjct: 471 LVWNSWMPSIRGAIQQWTCRQPEPLI 496


>AF134816-1|AAD40232.1|   50|Apis mellifera unknown protein.
          Length = 50

 Score = 21.4 bits (43), Expect = 9.7
 Identities = 9/44 (20%), Positives = 21/44 (47%)
 Frame = +3

Query: 90  QPCQRKRVQRRRNDLCRRSAPSCSRTSSVGLQDHSS*YQWQLHH 221
           Q   + + +RR+ +L +      +   S+  +DH+    W ++H
Sbjct: 1   QKVHQLKKKRRKKNLNQNQMMIWALDCSIKPKDHNGSIYWSMYH 44


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 213,915
Number of Sequences: 438
Number of extensions: 4632
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24396777
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)