Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP15_T7_L08
         (813 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4D7.01c |sec71|sec7a, SPAP8A3.15c|Sec7 domain|Schizosaccharo...    40   4e-04
SPAC30.01c |sec72|sec7b|Sec7 domain|Schizosaccharomyces pombe|ch...    38   0.002
SPAC11E3.11c |||guanyl-nucleotide exchange factor |Schizosacchar...    37   0.004
SPBC2D10.18 |abc1|coq8|ABC1 kinase family protein|Schizosaccharo...    29   1.0  
SPBP19A11.06 |lid2|SPBP4H10.01|Lid2 complex subunit Lid2 |Schizo...    27   3.2  
SPCC417.10 |||membrane transporter|Schizosaccharomyces pombe|chr...    27   4.2  
SPAC26A3.12c |dhp1||5'-3' exoribonuclease Dhp1 |Schizosaccharomy...    25   9.7  

>SPAC4D7.01c |sec71|sec7a, SPAP8A3.15c|Sec7 domain|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1811

 Score = 39.9 bits (89), Expect = 4e-04
 Identities = 21/64 (32%), Positives = 32/64 (50%)
 Frame = -2

Query: 551  NPRRVHTLTCAIMLLNTDLHGCGGALQRMSCAEFIDNLADLNDGDNFPRDTLKHLYHAIR 372
            N    + L  +I++LNTDLH       RM+C +FI N   ++DG N     L  +Y  I+
Sbjct: 820  NADTAYILAYSIIMLNTDLHS-PQVKNRMTCQDFIKNNRGVDDGANLSDSFLTEVYEEIQ 878

Query: 371  SQPL 360
               +
Sbjct: 879  KNEI 882


>SPAC30.01c |sec72|sec7b|Sec7 domain|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1822

 Score = 37.9 bits (84), Expect = 0.002
 Identities = 24/75 (32%), Positives = 35/75 (46%)
 Frame = -2

Query: 551  NPRRVHTLTCAIMLLNTDLHGCGGALQRMSCAEFIDNLADLNDGDNFPRDTLKHLYHAIR 372
            N    + L  +I+LLNTDLH       +M+  +FI N   +NDG +   D L  +Y  I 
Sbjct: 829  NADTAYILAYSIILLNTDLHS-PRIKNKMTKEDFIKNNRGINDGADLDEDYLGFVYDDIL 887

Query: 371  SQPLQWALDTESAVL 327
               +    D E A +
Sbjct: 888  KNEIAMKDDQELAAI 902


>SPAC11E3.11c |||guanyl-nucleotide exchange factor
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 942

 Score = 36.7 bits (81), Expect = 0.004
 Identities = 17/38 (44%), Positives = 27/38 (71%), Gaps = 1/38 (2%)
 Frame = -2

Query: 551 NPRRVHTLTCAIMLLNTDLHGCG-GALQRMSCAEFIDN 441
           NP+ VH++  +++LLNTDLH     A +RMS  +F++N
Sbjct: 426 NPQIVHSIAFSLLLLNTDLHIAELSASERMSRNQFVEN 463


>SPBC2D10.18 |abc1|coq8|ABC1 kinase family
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 610

 Score = 28.7 bits (61), Expect = 1.0
 Identities = 11/33 (33%), Positives = 17/33 (51%)
 Frame = +1

Query: 463 DIRCSAPPQPCRSVFSSIMAHVSVCTRLGLKFR 561
           D+R   PP+   S+   +  H  +C +LG K R
Sbjct: 564 DLRLQPPPEETYSLHRRLSGHFLLCAKLGAKVR 596


>SPBP19A11.06 |lid2|SPBP4H10.01|Lid2 complex subunit Lid2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1513

 Score = 27.1 bits (57), Expect = 3.2
 Identities = 11/28 (39%), Positives = 18/28 (64%)
 Frame = +1

Query: 412 KLSPSLRSARLSMNSAHDIRCSAPPQPC 495
           KL P++++ +L  +   +IRCS   QPC
Sbjct: 626 KLVPNIQALKLESSVPLEIRCSNCKQPC 653


>SPCC417.10 |||membrane transporter|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 508

 Score = 26.6 bits (56), Expect = 4.2
 Identities = 11/37 (29%), Positives = 17/37 (45%)
 Frame = -2

Query: 230 GYVMRKCCVDPNGKRTPFGRRGWKMFYCTLRDLVLYL 120
           G ++  C      KRT    RGWK+ +     L ++L
Sbjct: 200 GQILGSCMAYGLAKRTSLPMRGWKLIFIICGVLAIFL 236


>SPAC26A3.12c |dhp1||5'-3' exoribonuclease Dhp1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 991

 Score = 25.4 bits (53), Expect = 9.7
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = -1

Query: 237 QEGIRHEEMLRRSQREKNTFRTERLENVLL 148
           QE  R+E   RR QRE N      ++NV++
Sbjct: 401 QEDRRNENYRRRQQRESNQESESYVDNVVI 430


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,885,640
Number of Sequences: 5004
Number of extensions: 32380
Number of successful extensions: 100
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 96
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 98
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 396433620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)