Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP15_T7_L04
         (878 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    33   0.071
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    29   0.87 

>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 32.7 bits (71), Expect = 0.071
 Identities = 13/26 (50%), Positives = 13/26 (50%)
 Frame = +1

Query: 379 PPPPPGXXGFXFXXXPXPPPXXXGGG 456
           PPPPPG  G      P PPP    GG
Sbjct: 764 PPPPPGVAGAGPPPPPPPPPAVSAGG 789



 Score = 29.1 bits (62), Expect = 0.87
 Identities = 12/29 (41%), Positives = 12/29 (41%)
 Frame = +1

Query: 379 PPPPPGXXGFXFXXXPXPPPXXXGGGGGG 465
           PPPPP   G      P PPP       GG
Sbjct: 761 PPPPPPPPGVAGAGPPPPPPPPPAVSAGG 789



 Score = 28.3 bits (60), Expect = 1.5
 Identities = 12/29 (41%), Positives = 12/29 (41%)
 Frame = +3

Query: 378 PPPPPRXXGFXFFXXPXPPPXXXXGGGGG 464
           PPPPP   G      P PPP       GG
Sbjct: 761 PPPPPPPPGVAGAGPPPPPPPPPAVSAGG 789



 Score = 27.5 bits (58), Expect = 2.7
 Identities = 11/27 (40%), Positives = 11/27 (40%)
 Frame = -1

Query: 464 PPPPPPXXXGGGXGXXKKXKPXXPGGG 384
           PPPPPP   G G        P    GG
Sbjct: 763 PPPPPPGVAGAGPPPPPPPPPAVSAGG 789



 Score = 25.8 bits (54), Expect = 8.1
 Identities = 11/29 (37%), Positives = 11/29 (37%)
 Frame = -1

Query: 464 PPPPPPXXXGGGXGXXKKXKPXXPGGGGG 378
           PPPPPP     G G      P      GG
Sbjct: 761 PPPPPPPPGVAGAGPPPPPPPPPAVSAGG 789


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 29.1 bits (62), Expect = 0.87
 Identities = 11/20 (55%), Positives = 11/20 (55%)
 Frame = +1

Query: 379 PPPPPGXXGFXFXXXPXPPP 438
           PPPPP   GF     P PPP
Sbjct: 9   PPPPPPPPGFEPPSQPPPPP 28



 Score = 27.9 bits (59), Expect = 2.0
 Identities = 11/20 (55%), Positives = 11/20 (55%)
 Frame = +3

Query: 378 PPPPPRXXGFXFFXXPXPPP 437
           PPPPP   GF     P PPP
Sbjct: 9   PPPPPPPPGFEPPSQPPPPP 28


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,359,150
Number of Sequences: 5004
Number of extensions: 17048
Number of successful extensions: 204
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 136
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 440481800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)