Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP15_T7_K21
         (755 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC29B12.02c |set2||histone lysine methyltransferase Set2 |Schi...    28   1.7  
SPCC970.04c |mob2||protein kinase activator Mob2|Schizosaccharom...    27   2.2  
SPCC70.05c |||serine/threonine protein kinase |Schizosaccharomyc...    27   2.9  
SPBC19G7.05c |bgs1|cps1, drc1|1,3-beta-glucan synthase catalytic...    27   3.8  
SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1 |Schi...    26   5.0  
SPAC26F1.01 |sec74|SPAPJ691.01c|guanyl-nucleotide exchange facto...    26   6.7  
SPBC14C8.01c |cut2|SPBC1815.02c|securin|Schizosaccharomyces pomb...    26   6.7  
SPAC23H4.01c ||SPAP27G11.01|sterol binding ankyrin repeat protei...    26   6.7  
SPAC31G5.13 |rpn11|pad1, sks1, bfr2, mts5|19S proteasome regulat...    25   8.8  
SPAC328.06 |ubp2||ubiquitin C-terminal hydrolase Ubp2|Schizosacc...    25   8.8  
SPBC23E6.09 |ssn6||transcriptional corepressor Ssn6|Schizosaccha...    25   8.8  
SPAC521.04c |||calcium permease |Schizosaccharomyces pombe|chr 1...    25   8.8  

>SPAC29B12.02c |set2||histone lysine methyltransferase Set2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 798

 Score = 27.9 bits (59), Expect = 1.7
 Identities = 16/65 (24%), Positives = 28/65 (43%)
 Frame = -3

Query: 402 RSRWKLHTRPSRPNGKPSTSPKARHYGSS*SINGAFRHHKHRSPSSSNPSLATKGSTSEL 223
           +S W   T   +  G   +S  +  + S     G  +     SPS+S+PS A+  S S+ 
Sbjct: 21  KSSWSKDTIAVQAVGSSPSSSSSHDFESKEDAEGMNKDESAPSPSTSSPSSASSRSQSKY 80

Query: 222 THRHS 208
             + +
Sbjct: 81  VRKEA 85


>SPCC970.04c |mob2||protein kinase activator
           Mob2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 244

 Score = 27.5 bits (58), Expect = 2.2
 Identities = 17/42 (40%), Positives = 21/42 (50%)
 Frame = -3

Query: 306 NGAFRHHKHRSPSSSNPSLATKGSTSELTHRHSPLSFSPDLL 181
           N + RH      SSS+ S + K STS+L    SP S  P  L
Sbjct: 14  NRSKRHQNLSDASSSSGSFSKKSSTSQLVRTGSP-SVEPTAL 54


>SPCC70.05c |||serine/threonine protein kinase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 781

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 24/88 (27%), Positives = 38/88 (43%), Gaps = 4/88 (4%)
 Frame = -3

Query: 405 HRSRWKLHTRPSRPNGKPSTSPKARHYGSS*SINGAFRHHKHRSPSSSNPS--LATKGST 232
           H+S+   H + S PN + +  P  R   S+    G+ +     +  S + S  L +K   
Sbjct: 179 HKSQSYQHLKNSPPNSRTARKPVPRRANSASHNLGSTKSPNGNAKESLSRSAELPSKAKP 238

Query: 231 SELT--HRHSPLSFSPDLLSGSRFRSGG 154
            E+   +R  P   SP+  S  R R GG
Sbjct: 239 MEINNGYRKKPSPLSPN--SSIRNREGG 264


>SPBC19G7.05c |bgs1|cps1, drc1|1,3-beta-glucan synthase catalytic
           subunit Bgs1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1729

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 11/29 (37%), Positives = 15/29 (51%)
 Frame = +3

Query: 558 NNLXSARLWMPSEPGAFLGWRLWIASLTS 644
           N   +A     S+ GAF+ W LWI  L +
Sbjct: 487 NRFFTANFTPTSKTGAFVSWCLWITVLVA 515


>SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 374

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 28/92 (30%), Positives = 37/92 (40%)
 Frame = -3

Query: 423 TT*EPSHRSRWKLHTRPSRPNGKPSTSPKARHYGSS*SINGAFRHHKHRSPSSSNPSLAT 244
           TT  PS  S     +  S  +   S+S  +    SS S + +       S SSS+ S+  
Sbjct: 151 TTTSPSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSVPI 210

Query: 243 KGSTSELTHRHSPLSFSPDLLSGSRFRSGGRF 148
             STS  +H  S  S S    S SR  S   F
Sbjct: 211 TSSTSS-SHSSSS-SSSSSSSSSSRPSSSSSF 240


>SPAC26F1.01 |sec74|SPAPJ691.01c|guanyl-nucleotide exchange factor
           Sec74|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 928

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 16/53 (30%), Positives = 25/53 (47%)
 Frame = -3

Query: 357 KPSTSPKARHYGSS*SINGAFRHHKHRSPSSSNPSLATKGSTSELTHRHSPLS 199
           KPS    +R  G S ++  A    K    S S P +     T +++ +HSP+S
Sbjct: 24  KPSPPLPSRRKGKS-ALRSALE--KKNRKSKSKPKVTITSDTPKVSSQHSPVS 73


>SPBC14C8.01c |cut2|SPBC1815.02c|securin|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 301

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 11/35 (31%), Positives = 18/35 (51%)
 Frame = -3

Query: 651 PLTKLETRSTTSNLGRHQAPTASTTARXSGYSITI 547
           P+T +  R+ T   G  +AP  ST    +  S+T+
Sbjct: 16  PVTPISNRNGTKGAGSKRAPLGSTKQSNAPSSVTV 50


>SPAC23H4.01c ||SPAP27G11.01|sterol binding ankyrin repeat
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 945

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 12/27 (44%), Positives = 13/27 (48%)
 Frame = +2

Query: 218 WVSSLVEPFVASDGFDEDGDRCLWCLK 298
           W      P VA D  DEDG   +W LK
Sbjct: 898 WEPRWFVPSVAGDDEDEDGSGPIWQLK 924


>SPAC31G5.13 |rpn11|pad1, sks1, bfr2, mts5|19S proteasome regulatory
           subunit Rpn11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 308

 Score = 25.4 bits (53), Expect = 8.8
 Identities = 16/47 (34%), Positives = 20/47 (42%), Gaps = 3/47 (6%)
 Frame = -3

Query: 678 AFGXVTPPLPLTKLETRSTTSNLGRHQAPTASTTARXSG---YSITI 547
           AF  + P   +   E R TTSNLG    P+        G   YS+ I
Sbjct: 158 AFRLINPSTLMMGQEPRQTTSNLGHINKPSIQALIHGLGRHYYSLRI 204


>SPAC328.06 |ubp2||ubiquitin C-terminal hydrolase
           Ubp2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1141

 Score = 25.4 bits (53), Expect = 8.8
 Identities = 14/58 (24%), Positives = 25/58 (43%)
 Frame = -3

Query: 402 RSRWKLHTRPSRPNGKPSTSPKARHYGSS*SINGAFRHHKHRSPSSSNPSLATKGSTS 229
           ++R  LH +  R  GKP       +YG    I   +   +   P  ++P+ +   +TS
Sbjct: 66  KTRKHLHVKVRRDRGKPLIEEPEENYGIKDRIPVYYEEEELPEPHVTSPTKSEFATTS 123


>SPBC23E6.09 |ssn6||transcriptional corepressor
           Ssn6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1102

 Score = 25.4 bits (53), Expect = 8.8
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = -1

Query: 338 KHVITDPPDPLTVLLGTTSTGH 273
           +H++ +PP PLTVL      GH
Sbjct: 499 RHILDNPPKPLTVLDIYFQIGH 520


>SPAC521.04c |||calcium permease |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 881

 Score = 25.4 bits (53), Expect = 8.8
 Identities = 14/40 (35%), Positives = 23/40 (57%)
 Frame = -3

Query: 309 INGAFRHHKHRSPSSSNPSLATKGSTSELTHRHSPLSFSP 190
           +NG  +HH +R  +SS   L++ GS +E +  H P +  P
Sbjct: 664 VNGNSQHHHNRDDASS--GLSSNGSENE-SLEHEPTNELP 700


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,719,481
Number of Sequences: 5004
Number of extensions: 52925
Number of successful extensions: 175
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 160
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 172
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 361294920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)