Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP15_T7_K15
(782 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_01_0003 + 30085-30195,30289-30365,31080-31136,31668-33560,336... 32 0.59
04_04_1542 - 34264994-34265331,34266195-34267029 31 1.0
10_01_0100 + 1209424-1209538,1210373-1211073,1211158-1211379,121... 31 1.4
08_01_0059 - 394001-394708 31 1.4
04_01_0001 + 48461-48625,49314-50491,50620-50816,50896-52076 31 1.4
05_03_0458 + 14280953-14281866,14281964-14282912 29 5.5
06_01_0690 + 5033943-5034740 28 9.6
>08_01_0003 + 30085-30195,30289-30365,31080-31136,31668-33560,
33643-34147,34250-34358,34436-34548,34619-34806,
35481-36129,36169-36691,36760-36911,37042-37141,
37301-37416
Length = 1530
Score = 31.9 bits (69), Expect = 0.59
Identities = 17/60 (28%), Positives = 18/60 (30%)
Frame = +3
Query: 567 PRXXAXPXXXXPPXPPXXNXSXXHXPXGXXXPSXXXXXXXXTXXXXXPPPXPAPPXXXXP 746
P P PP PP + S P PS PPP P PP P
Sbjct: 1158 PPLPPSPPPATPPPPPPLSPSLPPPPPPPPLPSGPPPQPAPPPLPIQPPPIPPPPVPSSP 1217
Score = 31.5 bits (68), Expect = 0.78
Identities = 17/61 (27%), Positives = 19/61 (31%)
Frame = +2
Query: 599 SPXTPXXKXLXPTXPPXXXXPLXPXXXLXXHXXXXPPSPRACPSKXLXXPFXXSPPPXRX 778
S P L P+ PP P P PP P P + P PPP
Sbjct: 1151 SDSPPCQPPLPPSPPPATPPPPPPLSPSLPPPPPPPPLPSGPPPQPAPPPLPIQPPPIPP 1210
Query: 779 P 781
P
Sbjct: 1211 P 1211
>04_04_1542 - 34264994-34265331,34266195-34267029
Length = 390
Score = 31.1 bits (67), Expect = 1.0
Identities = 18/57 (31%), Positives = 20/57 (35%), Gaps = 1/57 (1%)
Frame = +2
Query: 602 PXTPXXKXLXPTXPPXXXXPLXPXXXLXXH-XXXXPPSPRACPSKXLXXPFXXSPPP 769
P P L P PP PL H PP P+ PS P +PPP
Sbjct: 218 PPPPLALPLPPPPPPSPPKPLVAQQQHHHHGHHHHPPPPQPPPSSLQLPPAVVAPPP 274
>10_01_0100 +
1209424-1209538,1210373-1211073,1211158-1211379,
1211452-1211878,1212091-1213219,1213623-1213746,
1214207-1214278,1215480-1215578,1215617-1215640,
1215704-1215745,1215815-1215895,1215983-1216114,
1216115-1216196,1216271-1216365,1218499-1218570,
1218676-1218792,1219379-1219447,1219521-1219587,
1219886-1220025
Length = 1269
Score = 30.7 bits (66), Expect = 1.4
Identities = 17/57 (29%), Positives = 17/57 (29%)
Frame = +3
Query: 561 PXPRXXAXPXXXXPPXPPXXNXSXXHXPXGXXXPSXXXXXXXXTXXXXXPPPXPAPP 731
P P A P PP PP N P P PPP P PP
Sbjct: 537 PSPTAAAPPPPPPPPPPPSGNKPAFSPPP-PPPPPPPPPLPQSNYASSQPPPPPPPP 592
>08_01_0059 - 394001-394708
Length = 235
Score = 30.7 bits (66), Expect = 1.4
Identities = 19/71 (26%), Positives = 21/71 (29%)
Frame = +1
Query: 562 PPXXXXXXRPXXFPPDPLXXTTPSXTXPXXPXXPLXXXXXXXAPXXXPXLPPXLPLQXPX 741
PP P PP P P + P P P P P PP P P
Sbjct: 4 PPPPRRAPPPPATPPPPPRRAPPPPSPPIRPPPPPTPRPYAPPPPSHPLAPPP-PHISPP 62
Query: 742 XPLXXXPXXXP 774
P+ P P
Sbjct: 63 APVPPPPSPPP 73
Score = 28.3 bits (60), Expect = 7.3
Identities = 18/69 (26%), Positives = 20/69 (28%), Gaps = 2/69 (2%)
Frame = +3
Query: 561 PXPRXXAXPXXXXPPXPPXXNXSXXHXPXGXXXP--SXXXXXXXXTXXXXXPPPXPAPPX 734
P P A P PP PP P P + PPP +PP
Sbjct: 4 PPPPRRAPPPPATPPPPPRRAPPPPSPPIRPPPPPTPRPYAPPPPSHPLAPPPPHISPPA 63
Query: 735 XXXPPXXXP 761
PP P
Sbjct: 64 PVPPPPSPP 72
>04_01_0001 + 48461-48625,49314-50491,50620-50816,50896-52076
Length = 906
Score = 30.7 bits (66), Expect = 1.4
Identities = 19/69 (27%), Positives = 20/69 (28%)
Frame = +3
Query: 567 PRXXAXPXXXXPPXPPXXNXSXXHXPXGXXXPSXXXXXXXXTXXXXXPPPXPAPPXXXXP 746
P P PP PP + H P P PPP PA P P
Sbjct: 277 PPPAGPPPPAPPPLPPSHHHHHGHHPP---PPHPLPPGAGAGAGTGAPPPPPAHPAAPAP 333
Query: 747 PXXXPXXXA 773
P P A
Sbjct: 334 PPPAPSPSA 342
>05_03_0458 + 14280953-14281866,14281964-14282912
Length = 620
Score = 28.7 bits (61), Expect = 5.5
Identities = 18/61 (29%), Positives = 20/61 (32%), Gaps = 1/61 (1%)
Frame = +1
Query: 601 PPDPLXXTTP-SXTXPXXPXXPLXXXXXXXAPXXXPXLPPXLPLQXPXXPLXXXPXXXPX 777
P P +TP S T P P +P P LPP P P P P
Sbjct: 31 PSPPSSNSTPTSSTTPTVPPSLTTTSSPSSSPSSPPPLPPLQPTPPPLPPTTLSCSSHPT 90
Query: 778 P 780
P
Sbjct: 91 P 91
>06_01_0690 + 5033943-5034740
Length = 265
Score = 27.9 bits (59), Expect = 9.6
Identities = 19/74 (25%), Positives = 21/74 (28%)
Frame = -2
Query: 748 GGXQXFGGAGXGGGXXXXXVXXQXXXXXEGXXXPWGXCXXEXFXXGGXGGXXXXGXAXXR 569
GG GG G G G G P+G GG GG G
Sbjct: 70 GGGGGGGGGGGGNGGSGYGSGSGSGYGQAGGYGPYGGYAQGGGGGGGGGGGQNGGSGYGS 129
Query: 568 GXGXXVXXSXWXGP 527
G G + GP
Sbjct: 130 GSGSGYGQAGGYGP 143
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,410,129
Number of Sequences: 37544
Number of extensions: 193892
Number of successful extensions: 2040
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1021
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1672
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2103658836
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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