Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP15_T7_K15
         (782 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U58755-7|AAB00696.1|  136|Caenorhabditis elegans Hypothetical pr...    30   1.6  
U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def...    30   2.1  
U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def...    30   2.1  
AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.    30   2.1  
AC024798-8|AAK29921.3| 1115|Caenorhabditis elegans Hypothetical ...    30   2.1  

>U58755-7|AAB00696.1|  136|Caenorhabditis elegans Hypothetical
           protein C34D4.11 protein.
          Length = 136

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 20/65 (30%), Positives = 20/65 (30%), Gaps = 1/65 (1%)
 Frame = -1

Query: 779 GXGXXXGXXXRGXXGXWRGRXGG-RXGXXXGAXXXXXXXRGXXGXXGXVXXGVVXXRGSG 603
           G G   G    G  G W G  GG   G   G        RG  G       G    RG G
Sbjct: 65  GGGRGGGWGNNGGGGNWGGNGGGGNGGGGRGGGGGGGGGRGGGGGGRGGGGGGGGGRGGG 124

Query: 602 GXXXG 588
           G   G
Sbjct: 125 GGGRG 129


>U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect
           protein 1, isoformb protein.
          Length = 1437

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 19/70 (27%), Positives = 19/70 (27%)
 Frame = +3

Query: 552 TXXPXPRXXAXPXXXXPPXPPXXNXSXXHXPXGXXXPSXXXXXXXXTXXXXXPPPXPAPP 731
           T  P P     P    PP PP         P     P               PPP P PP
Sbjct: 710 TGGPPPPPGLPPITGGPPPPPPPGG----LPPITGGPPPPPPPGGLPPISGGPPPPPPPP 765

Query: 732 XXXXPPXXXP 761
               PP   P
Sbjct: 766 GGCPPPPPPP 775


>U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect
           protein 1, isoforma protein.
          Length = 1435

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 19/70 (27%), Positives = 19/70 (27%)
 Frame = +3

Query: 552 TXXPXPRXXAXPXXXXPPXPPXXNXSXXHXPXGXXXPSXXXXXXXXTXXXXXPPPXPAPP 731
           T  P P     P    PP PP         P     P               PPP P PP
Sbjct: 710 TGGPPPPPGLPPITGGPPPPPPPGG----LPPITGGPPPPPPPGGLPPISGGPPPPPPPP 765

Query: 732 XXXXPPXXXP 761
               PP   P
Sbjct: 766 GGCPPPPPPP 775


>AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.
          Length = 1018

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 19/70 (27%), Positives = 19/70 (27%)
 Frame = +3

Query: 552 TXXPXPRXXAXPXXXXPPXPPXXNXSXXHXPXGXXXPSXXXXXXXXTXXXXXPPPXPAPP 731
           T  P P     P    PP PP         P     P               PPP P PP
Sbjct: 293 TGGPPPPPGLPPITGGPPPPPPPGG----LPPITGGPPPPPPPGGLPPISGGPPPPPPPP 348

Query: 732 XXXXPPXXXP 761
               PP   P
Sbjct: 349 GGCPPPPPPP 358


>AC024798-8|AAK29921.3| 1115|Caenorhabditis elegans Hypothetical
           protein Y48G9A.4 protein.
          Length = 1115

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 18/70 (25%), Positives = 19/70 (27%)
 Frame = +3

Query: 552 TXXPXPRXXAXPXXXXPPXPPXXNXSXXHXPXGXXXPSXXXXXXXXTXXXXXPPPXPAPP 731
           T    PR    P    PP PP       +       P               PPP P PP
Sbjct: 526 TSKDPPRPAPPPVSSIPPPPPIAGLLAANGT-NVPIPPPPPPPLPQNLSGAPPPPPPPPP 584

Query: 732 XXXXPPXXXP 761
               PP   P
Sbjct: 585 MLGGPPPPPP 594


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,473,678
Number of Sequences: 27780
Number of extensions: 112750
Number of successful extensions: 648
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 407
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 590
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1893203640
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)