Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP15_T7_K09
         (791 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces p...    29   0.58 
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    28   1.3  
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    27   4.1  
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M...    26   7.1  
SPBC428.02c |eca39|SPBC582.12c|branched chain amino acid aminotr...    26   7.1  

>SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 517

 Score = 29.5 bits (63), Expect = 0.58
 Identities = 13/37 (35%), Positives = 21/37 (56%), Gaps = 4/37 (10%)
 Frame = -2

Query: 337 RAPPPP----LRSLISNLSNTCDLTPLPEWSCEQSAW 239
           R+PPP     +RS+   L    D+TP+ +W  ++S W
Sbjct: 99  RSPPPSRERSVRSIEQELEQLRDVTPINQWKRKRSLW 135


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 20/68 (29%), Positives = 24/68 (35%), Gaps = 6/68 (8%)
 Frame = +2

Query: 497 PXPXXLRXXPXPPPXXPPTPXXXSXXXXXXXAGPXPLQRPVS------XRXSPXLXPXAP 658
           P P      P  PP  PP+    S       A P P   P++         +P L P AP
Sbjct: 416 PVPTPPSLPPSAPPSLPPSAPP-SLPMGAPAAPPLPPSAPIAPPLPAGMPAAPPLPPAAP 474

Query: 659 XPPXXXRP 682
            PP    P
Sbjct: 475 APPPAPAP 482


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 21/79 (26%), Positives = 27/79 (34%), Gaps = 7/79 (8%)
 Frame = +2

Query: 524  PXPPPXXPPTPXXXSXXXXXXXAGPX-------PLQRPVSXRXSPXLXPXAPXPPXXXRP 682
            P  PP  PP P   S       + P        PL +PVS   +  L    P P    + 
Sbjct: 963  PAAPPSIPP-PLPVSNILSSPTSEPPKDHPPSAPLSKPVSTSPAAPLARVPPVPKLSSKA 1021

Query: 683  XXLXXPXAXXXXAPXPXTS 739
              +  P A     P P T+
Sbjct: 1022 PPVPLPSADAPPIPVPSTA 1040


>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 309

 Score = 25.8 bits (54), Expect = 7.1
 Identities = 15/50 (30%), Positives = 17/50 (34%)
 Frame = +2

Query: 533 PPXXPPTPXXXSXXXXXXXAGPXPLQRPVSXRXSPXLXPXAPXPPXXXRP 682
           PP  P  P   S       A P P   P S   +P +   AP  P    P
Sbjct: 124 PPSAPAPPTPQSELRPPTSAPPRPSIPPPSPASAPPIPSKAPPIPSSLPP 173



 Score = 25.4 bits (53), Expect = 9.4
 Identities = 10/28 (35%), Positives = 11/28 (39%)
 Frame = +1

Query: 640 PXPXRPXPPXLXPPXXPXXXXXXPPXXP 723
           P P +P  P   PP  P      PP  P
Sbjct: 172 PPPAQPAAPVKSPPSAPSLPSAVPPMPP 199


>SPBC428.02c |eca39|SPBC582.12c|branched chain amino acid
           aminotransferase Eca39|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 380

 Score = 25.8 bits (54), Expect = 7.1
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = -2

Query: 328 PPPLRSLISNLSNTCDLTPLPEW 260
           P P+ S    ++N  +L PLPEW
Sbjct: 10  PKPMDSSHIKVTNVKELKPLPEW 32


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,304,621
Number of Sequences: 5004
Number of extensions: 16963
Number of successful extensions: 58
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 40
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 55
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 385381248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)