Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP15_T7_K05
         (1190 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    29   0.96 
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    28   2.2  

>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 29.5 bits (63), Expect = 0.96
 Identities = 19/69 (27%), Positives = 23/69 (33%), Gaps = 3/69 (4%)
 Frame = -2

Query: 493  PXXPXPXGXPPGPRPXLKXGNSPP---FXPQEXRGGGXPPXQKXXLXKXPGARYXAXPPP 323
            P  P P G PP P+P +     P      P      G PP  K  +   P       PP 
Sbjct: 1083 PPVPAPSGIPPVPKPSVAAPPVPKPSVAVPPVPAPSGAPPVPKPSVAAPPVPVPSGAPPV 1142

Query: 322  XXXIIFLPP 296
                +  PP
Sbjct: 1143 PKPSVAAPP 1151



 Score = 28.7 bits (61), Expect = 1.7
 Identities = 19/66 (28%), Positives = 24/66 (36%)
 Frame = -2

Query: 493  PXXPXPXGXPPGPRPXLKXGNSPPFXPQEXRGGGXPPXQKXXLXKXPGARYXAXPPPXXX 314
            P  P P G PP P+P +    +PP         G PP  K      P       PP    
Sbjct: 1150 PPVPAPSGAPPVPKPSVA---APPVPAP---SSGIPPVPKPAAGVPPVPPPSEAPPVPKP 1203

Query: 313  IIFLPP 296
             + +PP
Sbjct: 1204 SVGVPP 1209


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 28.3 bits (60), Expect = 2.2
 Identities = 17/54 (31%), Positives = 19/54 (35%), Gaps = 1/54 (1%)
 Frame = -2

Query: 484 PXPXGXPPGPRPXLKXGNSPPFXPQEXRGGG-XPPXQKXXLXKXPGARYXAXPP 326
           P P   P  P   +  G  PP  P    G G  PP          G+RY A  P
Sbjct: 744 PAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPPPAVSAGGSRYYAPAP 797



 Score = 26.6 bits (56), Expect = 6.8
 Identities = 12/36 (33%), Positives = 13/36 (36%)
 Frame = -3

Query: 429 PPPFXPRXXGGGGXPPPKXXXXIKXXGQDIXPXPPQ 322
           PPP  P   G G  PPP     +   G       PQ
Sbjct: 763 PPPPPPGVAGAGPPPPPPPPPAVSAGGSRYYAPAPQ 798


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,954,221
Number of Sequences: 5004
Number of extensions: 22029
Number of successful extensions: 55
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 47
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 641482604
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)