Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP15_T7_K05
(1190 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_05_0686 - 30900748-30902167,30903442-30904742 35 0.14
04_01_0001 + 48461-48625,49314-50491,50620-50816,50896-52076 34 0.19
08_01_0375 - 3307206-3307316,3307870-3307965,3308061-3308132,330... 33 0.44
04_03_0925 - 20856628-20856690,20856786-20856845,20856924-208570... 31 1.3
12_01_0033 - 272848-272943,274026-274169,274264-274375,274521-27... 31 1.8
07_03_0860 + 22057309-22058453,22059833-22059964,22060328-220604... 31 1.8
11_01_0035 - 256087-256185,256287-256430,256521-256632,256777-25... 31 2.4
04_03_0018 - 9434088-9434141,9434211-9434282,9434968-9435062,943... 31 2.4
02_01_0458 + 3291563-3291733,3292082-3292769,3292847-3293363,329... 30 3.1
03_02_0455 - 8630543-8630893,8630994-8631068,8631149-8631223,863... 30 4.1
07_01_0479 + 3606663-3607448 29 9.5
03_05_0067 - 20460206-20460703,20461255-20461530 29 9.5
>02_05_0686 - 30900748-30902167,30903442-30904742
Length = 906
Score = 34.7 bits (76), Expect = 0.14
Identities = 17/49 (34%), Positives = 19/49 (38%)
Frame = -2
Query: 493 PXXPXPXGXPPGPRPXLKXGNSPPFXPQEXRGGGXPPXQKXXLXKXPGA 347
P P P PP P P PP P +GG PP K + P A
Sbjct: 344 PPPPPPAKGPPPPPPPKGPSPPPPPPPGGKKGGPPPPPPKGGASRPPAA 392
Score = 28.7 bits (61), Expect = 9.5
Identities = 16/43 (37%), Positives = 16/43 (37%), Gaps = 1/43 (2%)
Frame = +3
Query: 1047 PPPPXKKNXALXXXXXXXKKXXXPPPPGFF-XXXXXLXGPPPP 1172
PPPP K A K PPPP GPPPP
Sbjct: 314 PPPPPPKPAAAAPPPPPPPKAAPPPPPPKGPPPPPPAKGPPPP 356
>04_01_0001 + 48461-48625,49314-50491,50620-50816,50896-52076
Length = 906
Score = 34.3 bits (75), Expect = 0.19
Identities = 20/57 (35%), Positives = 20/57 (35%)
Frame = -2
Query: 493 PXXPXPXGXPPGPRPXLKXGNSPPFXPQEXRGGGXPPXQKXXLXKXPGARYXAXPPP 323
P P P P PRP PP RGGG PP PG PPP
Sbjct: 349 PPPPPPPAAPAAPRPPGPGPGPPPPPGAAGRGGGGPPP-----PALPGGPRARGPPP 400
>08_01_0375 -
3307206-3307316,3307870-3307965,3308061-3308132,
3308247-3308315,3308427-3308513,3308753-3308858,
3309118-3309237,3309327-3309406,3309497-3309878,
3310746-3310814,3311460-3312202
Length = 644
Score = 33.1 bits (72), Expect = 0.44
Identities = 21/57 (36%), Positives = 22/57 (38%), Gaps = 3/57 (5%)
Frame = -2
Query: 484 PXPXGXPP---GPRPXLKXGNSPPFXPQEXRGGGXPPXQKXXLXKXPGARYXAXPPP 323
P P G PP P P G PP PQ G G P Q+ P Y PPP
Sbjct: 42 PPPQGAPPPFLAPPPPPPPGPPPPHQPQFNFGPGPPQQQQPP--PPPQMYYQPPPPP 96
Score = 31.9 bits (69), Expect = 1.0
Identities = 21/72 (29%), Positives = 25/72 (34%), Gaps = 6/72 (8%)
Frame = -2
Query: 493 PXXPXPXGXPPGPRPXL-----KXGNSPPFX-PQEXRGGGXPPXQKXXLXKXPGARYXAX 332
P P G PP +P G PPF P G PP + PG
Sbjct: 22 PPPMNPYGPPPPQQPAYGHMPPPQGAPPPFLAPPPPPPPGPPPPHQPQFNFGPGPPQQQQ 81
Query: 331 PPPXXXIIFLPP 296
PPP + + PP
Sbjct: 82 PPPPPQMYYQPP 93
>04_03_0925 -
20856628-20856690,20856786-20856845,20856924-20857001,
20857127-20857192,20857542-20858675,20858991-20860283
Length = 897
Score = 31.5 bits (68), Expect = 1.3
Identities = 15/56 (26%), Positives = 17/56 (30%)
Frame = -2
Query: 493 PXXPXPXGXPPGPRPXLKXGNSPPFXPQEXRGGGXPPXQKXXLXKXPGARYXAXPP 326
P P P PP P P + PP PP + P A PP
Sbjct: 4 PAEPPPPEHPPTPAPAPAPASPPPHPAASGNEAAAPPKPNPPITPAPARNASAAPP 59
>12_01_0033 -
272848-272943,274026-274169,274264-274375,274521-274702,
274781-274912,275038-276330,279841-280545,280649-280695,
280787-280865
Length = 929
Score = 31.1 bits (67), Expect = 1.8
Identities = 13/28 (46%), Positives = 14/28 (50%)
Frame = -2
Query: 493 PXXPXPXGXPPGPRPXLKXGNSPPFXPQ 410
P P P G PP P P K G PP P+
Sbjct: 615 PPPPRPPGAPPPPPPPGKPGGPPPPPPR 642
>07_03_0860 +
22057309-22058453,22059833-22059964,22060328-22060412,
22061666-22061867,22062273-22062344,22062509-22062573,
22062682-22062741,22063033-22064379,22064463-22064607,
22064688-22067442,22068540-22068630,22068655-22068873
Length = 2105
Score = 31.1 bits (67), Expect = 1.8
Identities = 12/28 (42%), Positives = 15/28 (53%)
Frame = -2
Query: 466 PPGPRPXLKXGNSPPFXPQEXRGGGXPP 383
PP P G+SP F P++ R G PP
Sbjct: 21 PPSPAAASSVGSSPAFPPRKRRRSGRPP 48
>11_01_0035 - 256087-256185,256287-256430,256521-256632,256777-256958,
257038-257169,257297-258589,259133-259837,260465-260549,
260604-260650,260810-260900,261838-262101,262195-262309,
262455-262570,262713-262847,262969-263036,263292-263411
Length = 1235
Score = 30.7 bits (66), Expect = 2.4
Identities = 13/27 (48%), Positives = 13/27 (48%)
Frame = -2
Query: 493 PXXPXPXGXPPGPRPXLKXGNSPPFXP 413
P P P G PP P P K G PP P
Sbjct: 920 PPPPRPPGAPPPPPPPGKPGGPPPPPP 946
>04_03_0018 - 9434088-9434141,9434211-9434282,9434968-9435062,
9435445-9435526,9435610-9435660,9435749-9435829,
9435965-9436006,9436117-9436215,9438130-9438201,
9438557-9438680,9438850-9439723,9440274-9440456,
9440941-9442741,9442825-9443049,9443117-9443814,
9444519-9444591
Length = 1541
Score = 30.7 bits (66), Expect = 2.4
Identities = 19/48 (39%), Positives = 19/48 (39%)
Frame = -3
Query: 525 GPPNPNLVGPXRXGLXPXGXRRGPGLX*RXVIPPPFXPRXXGGGGXPP 382
GPP P R G P G V PPP PR GG G PP
Sbjct: 1159 GPPAPPPPAGFRGGTPPPNAHGG-------VAPPPPPPRGHGGVGGPP 1199
>02_01_0458 +
3291563-3291733,3292082-3292769,3292847-3293363,
3293438-3293637,3294137-3294372,3294469-3295302
Length = 881
Score = 30.3 bits (65), Expect = 3.1
Identities = 12/28 (42%), Positives = 14/28 (50%)
Frame = -2
Query: 493 PXXPXPXGXPPGPRPXLKXGNSPPFXPQ 410
P P P PP P P +K G PP P+
Sbjct: 364 PPPPPPPPRPPPPPPPIKKGAPPPAPPK 391
>03_02_0455 -
8630543-8630893,8630994-8631068,8631149-8631223,
8631332-8631397,8631891-8631967,8632659-8633070
Length = 351
Score = 29.9 bits (64), Expect = 4.1
Identities = 19/54 (35%), Positives = 20/54 (37%)
Frame = -2
Query: 484 PXPXGXPPGPRPXLKXGNSPPFXPQEXRGGGXPPXQKXXLXKXPGARYXAXPPP 323
P P PP P P G PP P GG PP L P + PPP
Sbjct: 274 PPPPQAPPPPPPNAPMG-MPPRIPPPPVGGTQPPPPPPPLANGPP---RSIPPP 323
>07_01_0479 + 3606663-3607448
Length = 261
Score = 28.7 bits (61), Expect = 9.5
Identities = 21/69 (30%), Positives = 24/69 (34%), Gaps = 3/69 (4%)
Frame = -2
Query: 493 PXXPXPXGXPPGPRPXLKXGNSPPFXP-QEXRGGGXPPXQKXXL--XKXPGARYXAXPPP 323
P P P PPG P G PP P PP + + PG R PPP
Sbjct: 181 PQMPIPFQRPPGVPPAFPGGPPPPPGPFMRGPPPMGPPQVRPGMPGGPPPGMRPGMPPPP 240
Query: 322 XXXIIFLPP 296
+ PP
Sbjct: 241 FRPGMPPPP 249
>03_05_0067 - 20460206-20460703,20461255-20461530
Length = 257
Score = 28.7 bits (61), Expect = 9.5
Identities = 16/47 (34%), Positives = 18/47 (38%)
Frame = -2
Query: 463 PGPRPXLKXGNSPPFXPQEXRGGGXPPXQKXXLXKXPGARYXAXPPP 323
P P P G PP PQ + G PP + P A PPP
Sbjct: 4 PPPPPQWAMGPPPP--PQYFQAGPPPPPPQYFQGAHPPAAMWGQPPP 48
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,629,721
Number of Sequences: 37544
Number of extensions: 356331
Number of successful extensions: 1223
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 711
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1111
length of database: 14,793,348
effective HSP length: 84
effective length of database: 11,639,652
effective search space used: 3631571424
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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