Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP15_T7_K04
         (770 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB8E5.06c |rpl302|rpl3-2, rpl3-b|60S ribosomal protein L3|Sch...   131   1e-31
SPAC17A5.03 |rpl301|rpl3-1, rpl3|60S ribosomal protein L3 |Schiz...   131   1e-31
SPBC685.09 |orc2|orp2|origin recognition complex subunit Orc2|Sc...    29   0.74 
SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    27   3.0  
SPBC21.02 |||TLDc domain protein 2|Schizosaccharomyces pombe|chr...    27   3.9  
SPAC16A10.01 |||DUF1212 family protein|Schizosaccharomyces pombe...    26   6.9  
SPAC22F8.07c |rtf1||replication termination factor Rtf1|Schizosa...    25   9.1  

>SPAPB8E5.06c |rpl302|rpl3-2, rpl3-b|60S ribosomal protein
           L3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 388

 Score =  131 bits (316), Expect = 1e-31
 Identities = 69/124 (55%), Positives = 82/124 (66%)
 Frame = -2

Query: 658 QDEMIDCIGVTQGQRIQRCHFSLAHKEATPVRHTKXLRKVACIGAWHPSRVSFTVARAGQ 479
           Q+EMID IGVT+G+  +        K      H + LRKVACIGAWHP+ V +TVARAG 
Sbjct: 211 QNEMIDVIGVTRGKGNEGTTARWGTKRLPRKTH-RGLRKVACIGAWHPANVQWTVARAGN 269

Query: 478 KGYHHRTEMNKKIYRIGQGIHKKDGKVIKNNASTEYDLSEKSITPMGGFPHYGEVNNDFV 299
            GY HRT++N KIYRIG G    D K    NAST++D +EK ITPMGGF  YG V NDFV
Sbjct: 270 AGYMHRTQLNSKIYRIGAG---DDAK----NASTDFDATEKRITPMGGFVRYGVVENDFV 322

Query: 298 MIKG 287
           M+ G
Sbjct: 323 MLNG 326



 Score = 89.4 bits (212), Expect = 5e-19
 Identities = 40/61 (65%), Positives = 48/61 (78%)
 Frame = -1

Query: 290 GLLHGPKKRIITLRKSLRVHTKRAALEKINLKFIDASSKFGHGRFQTPADKAAFMGTLKK 111
           G   GP KR++TLRKSL  HT R ALE ++LK+ID +SKFGHGRFQTPA+   F+GTLKK
Sbjct: 326 GATPGPVKRVLTLRKSLLTHTSRKALEPVSLKWIDTASKFGHGRFQTPAEAKQFLGTLKK 385

Query: 110 D 108
           D
Sbjct: 386 D 386



 Score = 46.0 bits (104), Expect = 6e-06
 Identities = 29/75 (38%), Positives = 41/75 (54%), Gaps = 2/75 (2%)
 Frame = -1

Query: 770 KEXHIMEIQXXRGTXEDKVKWPREHLENXIPVDSVFAPR*ND*LHWCH-PRXKDTK-VSL 597
           K+ H+MEIQ   G+  DKV+W REH E  + + S F    N+ +      R K  +  + 
Sbjct: 174 KKAHLMEIQVNGGSVADKVEWAREHFEKTVDIKSTFEQ--NEMIDVIGVTRGKGNEGTTA 231

Query: 596 LVGTQRSYPRKTHQG 552
             GT+R  PRKTH+G
Sbjct: 232 RWGTKR-LPRKTHRG 245


>SPAC17A5.03 |rpl301|rpl3-1, rpl3|60S ribosomal protein L3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 388

 Score =  131 bits (316), Expect = 1e-31
 Identities = 69/124 (55%), Positives = 82/124 (66%)
 Frame = -2

Query: 658 QDEMIDCIGVTQGQRIQRCHFSLAHKEATPVRHTKXLRKVACIGAWHPSRVSFTVARAGQ 479
           Q+EMID IGVT+G+  +        K      H + LRKVACIGAWHP+ V +TVARAG 
Sbjct: 211 QNEMIDVIGVTRGKGNEGTTARWGTKRLPRKTH-RGLRKVACIGAWHPANVQWTVARAGN 269

Query: 478 KGYHHRTEMNKKIYRIGQGIHKKDGKVIKNNASTEYDLSEKSITPMGGFPHYGEVNNDFV 299
            GY HRT++N KIYRIG G    D K    NAST++D +EK ITPMGGF  YG V NDFV
Sbjct: 270 AGYMHRTQLNSKIYRIGAG---DDAK----NASTDFDATEKRITPMGGFVRYGVVENDFV 322

Query: 298 MIKG 287
           M+ G
Sbjct: 323 MLNG 326



 Score = 89.4 bits (212), Expect = 5e-19
 Identities = 40/61 (65%), Positives = 48/61 (78%)
 Frame = -1

Query: 290 GLLHGPKKRIITLRKSLRVHTKRAALEKINLKFIDASSKFGHGRFQTPADKAAFMGTLKK 111
           G   GP KR++TLRKSL  HT R ALE ++LK+ID +SKFGHGRFQTPA+   F+GTLKK
Sbjct: 326 GATPGPVKRVLTLRKSLLTHTSRKALEPVSLKWIDTASKFGHGRFQTPAEAKQFLGTLKK 385

Query: 110 D 108
           D
Sbjct: 386 D 386



 Score = 46.0 bits (104), Expect = 6e-06
 Identities = 29/75 (38%), Positives = 41/75 (54%), Gaps = 2/75 (2%)
 Frame = -1

Query: 770 KEXHIMEIQXXRGTXEDKVKWPREHLENXIPVDSVFAPR*ND*LHWCH-PRXKDTK-VSL 597
           K+ H+MEIQ   G+  DKV+W REH E  + + S F    N+ +      R K  +  + 
Sbjct: 174 KKAHLMEIQVNGGSVADKVEWAREHFEKTVDIKSTFEQ--NEMIDVIGVTRGKGNEGTTA 231

Query: 596 LVGTQRSYPRKTHQG 552
             GT+R  PRKTH+G
Sbjct: 232 RWGTKR-LPRKTHRG 245


>SPBC685.09 |orc2|orp2|origin recognition complex subunit
           Orc2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 535

 Score = 29.1 bits (62), Expect = 0.74
 Identities = 11/33 (33%), Positives = 21/33 (63%)
 Frame = +2

Query: 398 NFAILFVDSLSNTIDFLVHFSTVMITFLTSTSY 496
           NFA+L+  SL ++ +F++H +T    +   T+Y
Sbjct: 377 NFALLWDTSLESSFNFVMHDATTFARYYNETTY 409


>SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 230

 Score = 27.1 bits (57), Expect = 3.0
 Identities = 13/41 (31%), Positives = 22/41 (53%)
 Frame = +2

Query: 365 QVILSRCIVFNNFAILFVDSLSNTIDFLVHFSTVMITFLTS 487
           ++ L RC++   F +LF  S S +  FL   S + I + +S
Sbjct: 109 ELSLFRCLLLFFFFLLFFLSFSFSFSFLFFLSQIFIVYFSS 149


>SPBC21.02 |||TLDc domain protein 2|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 511

 Score = 26.6 bits (56), Expect = 3.9
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = -3

Query: 129 HGYTQEGSYSRRSCGYHNPS 70
           HGY+   +  R+ C YHNPS
Sbjct: 307 HGYSMY-ALERKMCNYHNPS 325


>SPAC16A10.01 |||DUF1212 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 830

 Score = 25.8 bits (54), Expect = 6.9
 Identities = 13/44 (29%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
 Frame = +2

Query: 350 NGFLRQVILSRCIVFNNFAI-LFVDSLSNTIDFLVHFSTVMITF 478
           N FL  +  SRC V  N+ I + V S    ++F++     M+ +
Sbjct: 366 NSFLHNMGYSRCYVDENYHITIHVSSYERRVEFMLAVCEAMMLY 409


>SPAC22F8.07c |rtf1||replication termination factor
           Rtf1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 466

 Score = 25.4 bits (53), Expect = 9.1
 Identities = 14/42 (33%), Positives = 19/42 (45%)
 Frame = +2

Query: 410 LFVDSLSNTIDFLVHFSTVMITFLTSTSYSERHPRRMPSSNA 535
           LF+D LS   D L+H   ++ +    T  S  H      SNA
Sbjct: 421 LFIDGLSTFSDTLIHLHKMLNSSPEETYISNLHDSYTAFSNA 462


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,263,516
Number of Sequences: 5004
Number of extensions: 68935
Number of successful extensions: 169
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 157
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 163
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 371330890
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)