Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP15_T7_K04
(770 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_01_0435 + 3428552-3428636,3429242-3429352,3429434-3429738,342... 151 8e-37
11_01_0427 + 3274817-3274901,3275587-3275697,3275979-3276283,327... 151 8e-37
04_04_0148 - 23114000-23114113,23114215-23114350,23114813-231149... 29 3.1
04_04_1477 + 33873976-33874080,33874433-33874544,33874777-338748... 29 5.4
08_02_0918 - 22617388-22617693,22617799-22617848,22618538-226188... 28 7.2
05_03_0496 + 14706959-14707020,14707173-14707538,14708070-147082... 28 9.5
>12_01_0435 +
3428552-3428636,3429242-3429352,3429434-3429738,
3429821-3430230,3430323-3430556,3430934-3431378,
3432300-3432390,3433292-3433518,3433786-3433861,
3434009-3434134,3434221-3434384
Length = 757
Score = 151 bits (365), Expect = 8e-37
Identities = 74/127 (58%), Positives = 92/127 (72%)
Frame = -2
Query: 658 QDEMIDCIGVTQGQRIQRCHFSLAHKEATPVRHTKXLRKVACIGAWHPSRVSFTVARAGQ 479
+DEMID IGVT+G+ + + P + + LRKVACIGAWHP+RVS+TVARAGQ
Sbjct: 214 KDEMIDIIGVTKGKGYEGV-VTRWGVTRLPRKTHRGLRKVACIGAWHPARVSYTVARAGQ 272
Query: 478 KGYHHRTEMNKKIYRIGQGIHKKDGKVIKNNASTEYDLSEKSITPMGGFPHYGEVNNDFV 299
GYHHRTEMNKK+Y+IG K G+ + A TE+D +EK ITPMGGFPHYG V D++
Sbjct: 273 NGYHHRTEMNKKVYKIG-----KSGQE-SHAACTEFDRTEKDITPMGGFPHYGVVKGDYL 326
Query: 298 MIKGCCM 278
MIKGCC+
Sbjct: 327 MIKGCCV 333
Score = 72.9 bits (171), Expect = 3e-13
Identities = 34/52 (65%), Positives = 40/52 (76%)
Frame = -1
Query: 293 QGLLHGPKKRIITLRKSLRVHTKRAALEKINLKFIDASSKFGHGRFQTPADK 138
+G GPKKR++TLR+SL T R ALE+I LKFID SSKFGHGRFQT +K
Sbjct: 329 KGCCVGPKKRVVTLRQSLLKQTSRLALEEIKLKFIDTSSKFGHGRFQTTDEK 380
Score = 39.1 bits (87), Expect = 0.004
Identities = 18/36 (50%), Positives = 23/36 (63%)
Frame = -1
Query: 770 KEXHIMEIQXXRGTXEDKVKWPREHLENXIPVDSVF 663
K+ H+MEIQ GT DKV + + E IPVD+VF
Sbjct: 177 KKAHLMEIQINGGTIADKVDYGYKFFEKEIPVDAVF 212
>11_01_0427 +
3274817-3274901,3275587-3275697,3275979-3276283,
3276406-3276815,3276942-3277200
Length = 389
Score = 151 bits (365), Expect = 8e-37
Identities = 74/127 (58%), Positives = 92/127 (72%)
Frame = -2
Query: 658 QDEMIDCIGVTQGQRIQRCHFSLAHKEATPVRHTKXLRKVACIGAWHPSRVSFTVARAGQ 479
+DEMID IGVT+G+ + + P + + LRKVACIGAWHP+RVS+TVARAGQ
Sbjct: 214 KDEMIDIIGVTKGKGYEGV-VTRWGVTRLPRKTHRGLRKVACIGAWHPARVSYTVARAGQ 272
Query: 478 KGYHHRTEMNKKIYRIGQGIHKKDGKVIKNNASTEYDLSEKSITPMGGFPHYGEVNNDFV 299
GYHHRTEMNKK+Y+IG K G+ + A TE+D +EK ITPMGGFPHYG V D++
Sbjct: 273 NGYHHRTEMNKKVYKIG-----KSGQE-SHAACTEFDRTEKDITPMGGFPHYGVVKGDYL 326
Query: 298 MIKGCCM 278
MIKGCC+
Sbjct: 327 MIKGCCV 333
Score = 80.2 bits (189), Expect = 2e-15
Identities = 38/60 (63%), Positives = 44/60 (73%)
Frame = -1
Query: 293 QGLLHGPKKRIITLRKSLRVHTKRAALEKINLKFIDASSKFGHGRFQTPADKAAFMGTLK 114
+G GPKKR++TLR+SL T R ALE+I LKFID SSKFGHGRFQT +K F G LK
Sbjct: 329 KGCCVGPKKRVVTLRQSLLKQTSRLALEEIKLKFIDTSSKFGHGRFQTTDEKQRFFGKLK 388
Score = 39.1 bits (87), Expect = 0.004
Identities = 18/36 (50%), Positives = 23/36 (63%)
Frame = -1
Query: 770 KEXHIMEIQXXRGTXEDKVKWPREHLENXIPVDSVF 663
K+ H+MEIQ GT DKV + + E IPVD+VF
Sbjct: 177 KKAHLMEIQINGGTIADKVDYGYKFFEKEIPVDAVF 212
>04_04_0148 -
23114000-23114113,23114215-23114350,23114813-23114912,
23115003-23115113,23115197-23115234,23115359-23115429,
23116998-23117176,23117272-23117389
Length = 288
Score = 29.5 bits (63), Expect = 3.1
Identities = 18/53 (33%), Positives = 27/53 (50%)
Frame = -2
Query: 646 IDCIGVTQGQRIQRCHFSLAHKEATPVRHTKXLRKVACIGAWHPSRVSFTVAR 488
+ CIG G +I R + H +++PVR+ + L K G +P FT AR
Sbjct: 164 LQCIGEAFGGKIIRAPSGVMHGKSSPVRYDEELGKALFNGLPNP----FTAAR 212
>04_04_1477 +
33873976-33874080,33874433-33874544,33874777-33874874,
33875548-33876261,33876348-33876518,33876955-33877011,
33877096-33878718
Length = 959
Score = 28.7 bits (61), Expect = 5.4
Identities = 10/31 (32%), Positives = 20/31 (64%)
Frame = -1
Query: 761 HIMEIQXXRGTXEDKVKWPREHLENXIPVDS 669
H++E + + ++K+K +H EN +P+DS
Sbjct: 460 HLLEDRENNESVDEKIKGDAQHEENTLPLDS 490
>08_02_0918 -
22617388-22617693,22617799-22617848,22618538-22618817,
22619654-22620340,22622870-22622944,22623150-22623285,
22624801-22625093,22625776-22626597
Length = 882
Score = 28.3 bits (60), Expect = 7.2
Identities = 21/79 (26%), Positives = 33/79 (41%), Gaps = 10/79 (12%)
Frame = -2
Query: 514 SRVSFTVARAGQKGYHHRTEMNKKIYRIGQG----------IHKKDGKVIKNNASTEYDL 365
++V F + GY H + +N ++ I G IH+ D + E L
Sbjct: 360 AQVIFMNRESANNGYMHTSSVNYELETIRSGTWLDVEHPRKIHRLDLDAVDQQKQLEKYL 419
Query: 364 SEKSITPMGGFPHYGEVNN 308
SEKS P+ FP V++
Sbjct: 420 SEKSNIPIPPFPDSSSVSS 438
>05_03_0496 +
14706959-14707020,14707173-14707538,14708070-14708209,
14708319-14708566,14708814-14708946,14709096-14709159,
14709284-14709380,14709505-14709607,14709702-14709838,
14710063-14710152,14710240-14710401
Length = 533
Score = 27.9 bits (59), Expect = 9.5
Identities = 15/40 (37%), Positives = 18/40 (45%)
Frame = +3
Query: 3 FFFFFALSNVYFHGRHLRLRSSRWGCGSRSFFANTILLEC 122
FFFFF +VY RH R R R R F ++ C
Sbjct: 103 FFFFFFSGDVYCGHRHFRRRRRRRQWDGRLVFGSSGASAC 142
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,671,530
Number of Sequences: 37544
Number of extensions: 469113
Number of successful extensions: 1209
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1171
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1203
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2075009728
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -