Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP15_T7_J23
(863 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 32 0.091
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 28 1.5
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 28 2.0
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ... 26 7.9
SPCC584.04 |sup35|erf3|translation release factor eRF3 |Schizosa... 26 7.9
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 32.3 bits (70), Expect = 0.091
Identities = 18/53 (33%), Positives = 20/53 (37%)
Frame = -2
Query: 736 PPPPXXGGXXGGGGPPPXXFXXXXXKXXPPPPPXFFXXKKKKXXPPPPXKXPP 578
PPPP G G G PPP PPPPP + P P + P
Sbjct: 762 PPPPPPPGVAGAGPPPP-----------PPPPPAVSAGGSRYYAPAPQAEPEP 803
Score = 31.9 bits (69), Expect = 0.12
Identities = 19/52 (36%), Positives = 19/52 (36%), Gaps = 9/52 (17%)
Frame = -2
Query: 661 KXXPPPPPXFFXXKKKKXX---PPP------PXKXPPXXGXGGLGXXPHPPP 533
K PPPPP PPP P PP G G G P PPP
Sbjct: 730 KSPPPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPP 781
Score = 30.7 bits (66), Expect = 0.28
Identities = 19/59 (32%), Positives = 19/59 (32%)
Frame = -2
Query: 736 PPPPXXGGXXGGGGPPPXXFXXXXXKXXPPPPPXFFXXKKKKXXPPPPXKXPPXXGXGG 560
PPPP P P PPPPP PPPP PP GG
Sbjct: 734 PPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPP---PGVAGAGPPPPPPPPPAVSAGG 789
Score = 29.5 bits (63), Expect = 0.64
Identities = 17/52 (32%), Positives = 18/52 (34%)
Frame = -2
Query: 736 PPPPXXGGXXGGGGPPPXXFXXXXXKXXPPPPPXFFXXKKKKXXPPPPXKXP 581
PPPP G GPPP PPPPP + P P P
Sbjct: 761 PPPPPPPPGVAGAGPPP-----------PPPPPPAVSAGGSRYYAPAPQAEP 801
Score = 29.1 bits (62), Expect = 0.85
Identities = 10/16 (62%), Positives = 10/16 (62%)
Frame = +3
Query: 690 GGPPPPXXPPXXGGGG 737
GGPPPP PP G G
Sbjct: 759 GGPPPPPPPPGVAGAG 774
Score = 27.9 bits (59), Expect = 2.0
Identities = 12/24 (50%), Positives = 12/24 (50%)
Frame = -3
Query: 603 PPPPXKXPXXXGXGXWGXPPTPPP 532
PPPP P G G PP PPP
Sbjct: 761 PPPPPPPPGVAGAGP-PPPPPPPP 783
Score = 25.8 bits (54), Expect = 7.9
Identities = 9/16 (56%), Positives = 9/16 (56%)
Frame = +3
Query: 690 GGPPPPXXPPXXGGGG 737
G PPPP PP GG
Sbjct: 774 GPPPPPPPPPAVSAGG 789
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 28.3 bits (60), Expect = 1.5
Identities = 10/20 (50%), Positives = 11/20 (55%)
Frame = -2
Query: 652 PPPPPXFFXXKKKKXXPPPP 593
PPPPP F + PPPP
Sbjct: 11 PPPPPPGFEPPSQPPPPPPP 30
Score = 27.9 bits (59), Expect = 2.0
Identities = 12/35 (34%), Positives = 14/35 (40%)
Frame = -2
Query: 706 GGGGPPPXXFXXXXXKXXPPPPPXFFXXKKKKXXP 602
G PPP PPPPP + K+K P
Sbjct: 7 GNPPPPPPPPGFEPPSQPPPPPPPGYVKKRKNKTP 41
Score = 27.1 bits (57), Expect = 3.4
Identities = 13/35 (37%), Positives = 14/35 (40%)
Frame = -2
Query: 703 GGGPPPXXFXXXXXKXXPPPPPXFFXXKKKKXXPP 599
G PPP PPPPP KK+K P
Sbjct: 7 GNPPPPPPPPGFEPPSQPPPPPPPGYVKKRKNKTP 41
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 27.9 bits (59), Expect = 2.0
Identities = 22/91 (24%), Positives = 27/91 (29%), Gaps = 16/91 (17%)
Frame = -2
Query: 733 PPPXXGGXXGGGGPPPXXFXXXXXKXXPPPPPXF--------FXXKKKKXXPPPPXK--- 587
PPP G PP PPPPP + + PPPP +
Sbjct: 311 PPPPPPPSRRNRGKPPIGNGSSNSSLPPPPPPPRSNAAGSIPLPPQGRSAPPPPPPRSAP 370
Query: 586 -----XPPXXGXGGLGXXPHPPPXXKKKKXP 509
PP + P PPP + P
Sbjct: 371 STGRQPPPLSSSRAVSNPPAPPPAIPGRSAP 401
Score = 27.1 bits (57), Expect = 3.4
Identities = 14/46 (30%), Positives = 15/46 (32%)
Frame = -2
Query: 736 PPPPXXGGXXGGGGPPPXXFXXXXXKXXPPPPPXFFXXKKKKXXPP 599
PPPP G PPP PP PP + PP
Sbjct: 362 PPPPPRSAPSTGRQPPPLSSSRAVSN--PPAPPPAIPGRSAPALPP 405
Score = 25.8 bits (54), Expect = 7.9
Identities = 11/33 (33%), Positives = 11/33 (33%)
Frame = -1
Query: 737 PPPPPXGGXXGXGGAPPPXFXXXXXKXXXPPXP 639
PPPPP G PPP P P
Sbjct: 361 PPPPPPRSAPSTGRQPPPLSSSRAVSNPPAPPP 393
>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1420
Score = 25.8 bits (54), Expect = 7.9
Identities = 14/53 (26%), Positives = 17/53 (32%)
Frame = -2
Query: 736 PPPPXXGGXXGGGGPPPXXFXXXXXKXXPPPPPXFFXXKKKKXXPPPPXKXPP 578
PPPP P + P PP + K+ P PP PP
Sbjct: 193 PPPPPAVEDQAADANEPDDYYSSGRAVSPEIPPTY-TPKQADPLPAPPPPPPP 244
>SPCC584.04 |sup35|erf3|translation release factor eRF3
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 662
Score = 25.8 bits (54), Expect = 7.9
Identities = 14/48 (29%), Positives = 16/48 (33%)
Frame = -2
Query: 661 KXXPPPPPXFFXXKKKKXXPPPPXKXPPXXGXGGLGXXPHPPPXXKKK 518
K P P KK+ PPP + P L P P KK
Sbjct: 157 KTETPAPKVTSESTKKETAAPPPQETPTKSADAELAKTPSAPAAALKK 204
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,338,226
Number of Sequences: 5004
Number of extensions: 36814
Number of successful extensions: 152
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 39
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 102
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 430470850
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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