Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP15_T7_J19
(767 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 33 0.045
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 32 0.078
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 30 0.42
SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces p... 28 1.3
SPBC428.02c |eca39|SPBC582.12c|branched chain amino acid aminotr... 26 6.8
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 33.1 bits (72), Expect = 0.045
Identities = 23/66 (34%), Positives = 24/66 (36%), Gaps = 3/66 (4%)
Frame = +1
Query: 406 PPSPPPXPXGXFX--LXPXGXXPXXSXXPXHLPXSXXGSXXVXXPXXXPGXXPXXXXAXP 579
PP+PPP G L P G S P P S S P P P A P
Sbjct: 388 PPAPPPAIPGRSAPALPPLGNASRTSTPPVPTPPSLPPSAPPSLPPSAPPSLPMGAPAAP 447
Query: 580 P-PPXA 594
P PP A
Sbjct: 448 PLPPSA 453
Score = 26.6 bits (56), Expect = 3.9
Identities = 34/146 (23%), Positives = 39/146 (26%), Gaps = 7/146 (4%)
Frame = +3
Query: 318 SGGGGAXXPPXPRXXPPAPPXXXPXHXXAAPLXXXXPPXXXXPXPXXXXXXXXPXSXXSX 497
+ G PP R PP PP +AP PP P P +
Sbjct: 346 NAAGSIPLPPQGRSAPPPPP------PRSAPSTGRQPP----PLSSSRAVSNPPAPPPA- 394
Query: 498 XVSGGEXPGXPPXXXXRXPPAGXXXXPP------PPXRVPSXPXXXGRXXXRXXPRPGAF 659
+ G P PP PP PP PS P P P +
Sbjct: 395 -IPGRSAPALPPLGNASRTSTPPVPTPPSLPPSAPPSLPPSAPPSLPMGAPAAPPLPPSA 453
Query: 660 P-XPXFXLXXPXXXTPPXXXPXXXPA 734
P P P P P PA
Sbjct: 454 PIAPPLPAGMPAAPPLPPAAPAPPPA 479
Score = 26.2 bits (55), Expect = 5.2
Identities = 22/81 (27%), Positives = 22/81 (27%), Gaps = 4/81 (4%)
Frame = +3
Query: 363 PPAPPXXXPXHXXAAPLXXXXPPXXXXPXPXXXXXXXXPXSXXSXXVSGGEXPGXPPXXX 542
PP PP A PP P P P S P PP
Sbjct: 290 PPLPPPSSRVSAAALAANKKRPPP---PPPPSRRNRGKPPIGNGSSNSSLPPPPPPPRSN 346
Query: 543 XRX----PPAGXXXXPPPPXR 593
PP G PPPP R
Sbjct: 347 AAGSIPLPPQGRSAPPPPPPR 367
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 32.3 bits (70), Expect = 0.078
Identities = 30/132 (22%), Positives = 35/132 (26%), Gaps = 1/132 (0%)
Frame = +3
Query: 342 PPXPRXXPPAPPXXXPXHXXAAPLXXXXPPXXXXPXPXXXXXXXXPXSXXSXXVSGGEXP 521
PP P APP P P+ P P P + E P
Sbjct: 1022 PPVPLPSADAPPIPVPSTAPPVPIPTSTP-------PVPKSSSGAPSAPPPVPAPSSEIP 1074
Query: 522 GXPPXXXXRXPPAGXXXXPPPPXRVPSXPXXXGRXXXRXXPRP-GAFPXPXFXLXXPXXX 698
P PA P P V + P P P GA P P + P
Sbjct: 1075 SIPAPSGAPPVPAPSGIPPVPKPSVAAPPVPKPSVAVPPVPAPSGAPPVPKPSVAAPPVP 1134
Query: 699 TPPXXXPXXXPA 734
P P P+
Sbjct: 1135 VPSGAPPVPKPS 1146
Score = 27.9 bits (59), Expect = 1.7
Identities = 29/127 (22%), Positives = 31/127 (24%), Gaps = 1/127 (0%)
Frame = +3
Query: 342 PPXPRXXPPAPPXXXPXHXXAAPLXXXXPPXXXXPXPXXXXXXXXPXSXXSXXVSGGEXP 521
PP P+ APP P P P P + G P
Sbjct: 1140 PPVPKPSVAAPPVPAPSGAPPVPKPSVAAPPVPAPSSGIPPVPKP---------AAGVPP 1190
Query: 522 GXPPXXXXRXPPAGXXXXP-PPPXRVPSXPXXXGRXXXRXXPRPGAFPXPXFXLXXPXXX 698
PP P P PPP P P P A P P P
Sbjct: 1191 VPPPSEAPPVPKPSVGVPPVPPPSTAPPVPTPSAGLPPVPVPTAKAPPVPAPSSEAPSVS 1250
Query: 699 TPPXXXP 719
TP P
Sbjct: 1251 TPRSSVP 1257
Score = 27.5 bits (58), Expect = 2.2
Identities = 22/86 (25%), Positives = 24/86 (27%)
Frame = +3
Query: 342 PPXPRXXPPAPPXXXPXHXXAAPLXXXXPPXXXXPXPXXXXXXXXPXSXXSXXVSGGEXP 521
PP P+ APP P P P P P P +
Sbjct: 1121 PPVPKPSVAAPPVPVPSGAPPVP----KPSVAAPPVPAPSGAPPVPKPSVAAPPVPAPSS 1176
Query: 522 GXPPXXXXRXPPAGXXXXPPPPXRVP 599
G PP P AG PPP P
Sbjct: 1177 GIPPVP---KPAAGVPPVPPPSEAPP 1199
Score = 26.2 bits (55), Expect = 5.2
Identities = 18/65 (27%), Positives = 18/65 (27%)
Frame = +1
Query: 403 PPPSPPPXPXGXFXLXPXGXXPXXSXXPXHLPXSXXGSXXVXXPXXXPGXXPXXXXAXPP 582
PP PPP P P P P P S S P P PP
Sbjct: 966 PPSIPPPLPVSNILSSPTSEPP--KDHPPSAPLSKPVSTSPAAPLARVPPVPKLSSKAPP 1023
Query: 583 PPXAS 597
P S
Sbjct: 1024 VPLPS 1028
Score = 26.2 bits (55), Expect = 5.2
Identities = 33/142 (23%), Positives = 35/142 (24%), Gaps = 4/142 (2%)
Frame = +3
Query: 318 SGGGGAXXPPXPRXXPPAPPXXXPXHXXAAPLXXXXPPXXXXPXPXXXXXXXXPXSXXSX 497
S G + PP P P P P PP P P S
Sbjct: 1056 SSGAPSAPPPVPAPSSEIPSIPAPSGAPPVPAPSGIPP---VPKPSVAAPPVPKPSVAVP 1112
Query: 498 XV---SGGEXPGXPPXXXXRXP-PAGXXXXPPPPXRVPSXPXXXGRXXXRXXPRPGAFPX 665
V SG P P P+G P P P P G P A P
Sbjct: 1113 PVPAPSGAPPVPKPSVAAPPVPVPSGAPPVPKPSVAAPPVPAPSGAPPV-PKPSVAAPPV 1171
Query: 666 PXFXLXXPXXXTPPXXXPXXXP 731
P P P P P
Sbjct: 1172 PAPSSGIPPVPKPAAGVPPVPP 1193
>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 309
Score = 29.9 bits (64), Expect = 0.42
Identities = 26/113 (23%), Positives = 32/113 (28%), Gaps = 4/113 (3%)
Frame = +3
Query: 342 PPXPRXXPPAPPXXXPXHXXAAPLXXXXPPXXXXPXPXXXXXXXXPXSXXSXXVSGGEXP 521
PP P PP+P P A P+ PP P P + P
Sbjct: 144 PPRPSIPPPSPASAPPIPSKAPPIPSSLPP----PAQPAAPVKSPPSAPSLPSAVPPMPP 199
Query: 522 GXPPXXXXRXPPAGXXXXP----PPPXRVPSXPXXXGRXXXRXXPRPGAFPXP 668
PP + P A P PP P+ + R P A P
Sbjct: 200 KVPPPPLSQAPVANTSSRPSSFAPPAGHAPNVTSESPKFPNRGPSIPSASVPP 252
Score = 25.4 bits (53), Expect = 9.0
Identities = 11/27 (40%), Positives = 12/27 (44%)
Frame = +3
Query: 333 AXXPPXPRXXPPAPPXXXPXHXXAAPL 413
A PP P PP P P AAP+
Sbjct: 155 ASAPPIPSKAPPIPSSLPPPAQPAAPV 181
>SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 517
Score = 28.3 bits (60), Expect = 1.3
Identities = 13/40 (32%), Positives = 21/40 (52%), Gaps = 4/40 (10%)
Frame = -2
Query: 346 GGXXAPPPP----LRSLISNLSNTCDLTPLPEWSCEQSAW 239
G +PPP +RS+ L D+TP+ +W ++S W
Sbjct: 96 GRSRSPPPSRERSVRSIEQELEQLRDVTPINQWKRKRSLW 135
>SPBC428.02c |eca39|SPBC582.12c|branched chain amino acid
aminotransferase Eca39|Schizosaccharomyces pombe|chr
2|||Manual
Length = 380
Score = 25.8 bits (54), Expect = 6.8
Identities = 10/23 (43%), Positives = 14/23 (60%)
Frame = -2
Query: 328 PPPLRSLISNLSNTCDLTPLPEW 260
P P+ S ++N +L PLPEW
Sbjct: 10 PKPMDSSHIKVTNVKELKPLPEW 32
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,565,939
Number of Sequences: 5004
Number of extensions: 20603
Number of successful extensions: 118
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 56
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 89
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 369323696
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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