Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP15_T7_J19
         (767 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ257415-1|ABB81846.1|  430|Apis mellifera yellow-like protein p...    25   1.0  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       23   4.1  
AY375535-1|AAQ82648.1|  147|Apis mellifera doublesex protein.          22   5.5  
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    22   7.2  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    22   7.2  

>DQ257415-1|ABB81846.1|  430|Apis mellifera yellow-like protein
           protein.
          Length = 430

 Score = 24.6 bits (51), Expect = 1.0
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = -2

Query: 313 SLISNLSNTCDLTPLPEWSCEQSAWWGACGRVL 215
           SL +N   +  LTP P W+  ++   GACG  +
Sbjct: 98  SLDTNRGGSPKLTPYPNWAQNKA---GACGSAI 127


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 22.6 bits (46), Expect = 4.1
 Identities = 10/32 (31%), Positives = 11/32 (34%)
 Frame = +2

Query: 575 SPPPXPRPXSSXXXXAXGXXGXPPSGSXPXAP 670
           +P P P P  S      G    P  G  P  P
Sbjct: 20  APGPQPSPHQSPQAPQRGSPPNPSQGPPPGGP 51


>AY375535-1|AAQ82648.1|  147|Apis mellifera doublesex protein.
          Length = 147

 Score = 22.2 bits (45), Expect = 5.5
 Identities = 12/36 (33%), Positives = 16/36 (44%)
 Frame = -2

Query: 370 AGGXXRGXGGXXAPPPPLRSLISNLSNTCDLTPLPE 263
           + G   G GG     PP R L     +T  +T LP+
Sbjct: 81  SNGIHTGFGGSIITIPPTRKLPPLHPHTAMVTHLPQ 116


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 21.8 bits (44), Expect = 7.2
 Identities = 8/21 (38%), Positives = 9/21 (42%)
 Frame = +3

Query: 327 GGAXXPPXPRXXPPAPPXXXP 389
           G +  PP P   PP P    P
Sbjct: 333 GDSDTPPKPAPPPPPPSSSGP 353


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 21.8 bits (44), Expect = 7.2
 Identities = 7/11 (63%), Positives = 7/11 (63%)
 Frame = +1

Query: 403  PPPSPPPXPXG 435
            PPP PPP   G
Sbjct: 1355 PPPPPPPPSSG 1365


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 141,806
Number of Sequences: 438
Number of extensions: 3162
Number of successful extensions: 10
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24032646
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)