Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP15_T7_J18
(765 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|ch... 225 4e-60
SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha 2|Schizosacchar... 222 4e-59
SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces... 82 7e-17
SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|... 52 1e-07
SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr 1... 35 0.011
SPCC965.04c |||mitochondrial inner membrane i-AAA protease compl... 28 1.3
SPAC22G7.06c |ura1||carbamoyl-phosphate synthase |Schizosaccharo... 27 2.9
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 27 3.9
SPAC1B3.15c |||membrane transporter|Schizosaccharomyces pombe|ch... 26 5.1
SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr 2... 26 5.1
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 26 6.8
SPAC222.10c |byr4||two-component GAP Byr4|Schizosaccharomyces po... 25 9.0
>SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 455
Score = 225 bits (551), Expect = 4e-60
Identities = 100/128 (78%), Positives = 115/128 (89%), Gaps = 1/128 (0%)
Frame = -1
Query: 519 WLAVCCT-RGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKV 343
++A C RGDV+P+DV AA+ +IK++RTIQFVDWCPTGFK+GI Y+PP VPG +AKV
Sbjct: 316 YMATCLLYRGDVIPRDVQAAVTSIKSRRTIQFVDWCPTGFKIGICYEPPQHVPGSGIAKV 375
Query: 342 QRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKD 163
RAVCMLSNTT+IAEAW+RLDHKFDLMY+KRAFVHWYVGEGMEEGEFSEAREDLAALE+D
Sbjct: 376 NRAVCMLSNTTSIAEAWSRLDHKFDLMYSKRAFVHWYVGEGMEEGEFSEAREDLAALERD 435
Query: 162 YEEVGMDS 139
YEEVG DS
Sbjct: 436 YEEVGQDS 443
Score = 102 bits (245), Expect = 5e-23
Identities = 45/59 (76%), Positives = 48/59 (81%)
Frame = -2
Query: 713 NWDXTEFQXNLVPYPRIHFPLVTYAPVXSAEKAYHEQLSVAEITNACFEPANQMVKCDP 537
N D EFQ NLVPYPRIHFPLVTY+P+ SA KA+HE SV EITN CFEP NQMVKCDP
Sbjct: 253 NVDLNEFQTNLVPYPRIHFPLVTYSPIVSAAKAFHESNSVQEITNQCFEPYNQMVKCDP 311
Score = 26.2 bits (55), Expect = 5.1
Identities = 9/13 (69%), Positives = 11/13 (84%)
Frame = -3
Query: 538 PRHGKYMACCMLY 500
PR G+YMA C+LY
Sbjct: 311 PRTGRYMATCLLY 323
>SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha
2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 449
Score = 222 bits (543), Expect = 4e-59
Identities = 100/131 (76%), Positives = 114/131 (87%), Gaps = 1/131 (0%)
Frame = -1
Query: 528 ASTWLAVCCT-RGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDL 352
A ++A C RGDV+P+DV AA+ TIK KRTIQFVDWCPTGFK+GI +PP + G ++
Sbjct: 309 AGRYMATCLLYRGDVIPRDVQAAVTTIKAKRTIQFVDWCPTGFKIGICDRPPQHIEGSEI 368
Query: 351 AKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAAL 172
AKV RAVCMLSNTT+IAEAW+RLDHKFDLMY+KRAFVHWYVGEGMEEGEFSEAREDLAAL
Sbjct: 369 AKVDRAVCMLSNTTSIAEAWSRLDHKFDLMYSKRAFVHWYVGEGMEEGEFSEAREDLAAL 428
Query: 171 EKDYEEVGMDS 139
E+DYEEVG DS
Sbjct: 429 ERDYEEVGQDS 439
Score = 103 bits (248), Expect = 2e-23
Identities = 46/59 (77%), Positives = 48/59 (81%)
Frame = -2
Query: 713 NWDXTEFQXNLVPYPRIHFPLVTYAPVXSAEKAYHEQLSVAEITNACFEPANQMVKCDP 537
N D EFQ NLVPYPRIHFPLVTYAP+ SA KA+HE SV EITN CFEP NQMVKCDP
Sbjct: 249 NVDLAEFQTNLVPYPRIHFPLVTYAPIVSAAKAFHESNSVQEITNQCFEPYNQMVKCDP 307
Score = 26.2 bits (55), Expect = 5.1
Identities = 9/13 (69%), Positives = 11/13 (84%)
Frame = -3
Query: 538 PRHGKYMACCMLY 500
PR G+YMA C+LY
Sbjct: 307 PRAGRYMATCLLY 319
>SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 448
Score = 82.2 bits (194), Expect = 7e-17
Identities = 44/122 (36%), Positives = 69/122 (56%), Gaps = 3/122 (2%)
Frame = -1
Query: 498 RGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLS 319
RG V K+V+ I +++TK + FV+W P + PP DL + + +
Sbjct: 318 RGKVSMKEVDEQIRSVQTKNSAYFVEWIPDNVLKAVCSVPPK-----DL---KMSATFIG 369
Query: 318 NTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAR---EDLAALEKDYEEVG 148
N+T+I E + RL +F M+ ++AF+HWY GEGM+E EF+EA DL + + Y+E G
Sbjct: 370 NSTSIQEIFRRLGDQFSAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQEAG 429
Query: 147 MD 142
+D
Sbjct: 430 ID 431
Score = 51.2 bits (117), Expect = 2e-07
Identities = 22/59 (37%), Positives = 35/59 (59%)
Frame = -2
Query: 713 NWDXTEFQXNLVPYPRIHFPLVTYAPVXSAEKAYHEQLSVAEITNACFEPANQMVKCDP 537
N D + N+VP+PR+HF +V +AP+ + + + +SV E+T F+ N MV DP
Sbjct: 247 NSDLRKLAVNMVPFPRLHFFMVGFAPLAAIGSSSFQAVSVPELTQQMFDANNMMVAADP 305
>SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 446
Score = 51.6 bits (118), Expect = 1e-07
Identities = 31/117 (26%), Positives = 60/117 (51%), Gaps = 3/117 (2%)
Frame = -1
Query: 498 RGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLS 319
+G+ P DV+ ++ I+ +R F+ W P +V ++ + P + ++ + ML+
Sbjct: 325 QGEADPADVHKSLLRIRERRYASFIPWGPASIQVALSKKSPYIKTNHRVSGL-----MLA 379
Query: 318 NTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEE---GEFSEAREDLAALEKDYE 157
N T+IA + R ++D + + AF+ Y E + E EF +R+ +A L +YE
Sbjct: 380 NHTSIASLFKRTLDQYDRLRKRNAFLEQYKKEAIFEDDLNEFDSSRDVVADLINEYE 436
Score = 34.7 bits (76), Expect = 0.015
Identities = 19/64 (29%), Positives = 29/64 (45%), Gaps = 3/64 (4%)
Frame = -2
Query: 719 FXNWDXTEFQXNLVPYPRIHFPLVTYAPVXS---AEKAYHEQLSVAEITNACFEPANQMV 549
+ N D +L+P PR HF L +Y P + E + +V ++ P NQMV
Sbjct: 248 YMNNDLVSIIASLIPSPRCHFLLTSYTPFTNQQVEEAKAIRKTTVLDVMRRLLLPKNQMV 307
Query: 548 KCDP 537
+P
Sbjct: 308 SVNP 311
>SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 857
Score = 35.1 bits (77), Expect = 0.011
Identities = 18/48 (37%), Positives = 23/48 (47%)
Frame = -2
Query: 506 AVPVVTSYPRM*TRPSLPSKPSVLSNSSTGVQPVSRSVSTTSHPPWCP 363
A PVV P + RP++P P LS V PV+ V + PP P
Sbjct: 549 AAPVVPEAPSVPQRPAVPVVPEALSVPQPPVAPVAPEVPSVPQPPVAP 596
Score = 29.5 bits (63), Expect = 0.55
Identities = 16/48 (33%), Positives = 20/48 (41%)
Frame = -2
Query: 506 AVPVVTSYPRM*TRPSLPSKPSVLSNSSTGVQPVSRSVSTTSHPPWCP 363
A PVV P + RP++P P S PV V + PP P
Sbjct: 639 AAPVVPEVPSVPQRPAVPVVPEAPSVPQPPAAPVVPEVPSVPQPPAVP 686
Score = 28.3 bits (60), Expect = 1.3
Identities = 24/93 (25%), Positives = 33/93 (35%)
Frame = -2
Query: 638 PVXSAEKAYHEQLSVAEITNACFEPANQMVKCDPPSWQVHGLLYAVPVVTSYPRM*TRPS 459
P A + + IT + +P V + PS P V S P+ P
Sbjct: 493 PERDISSASQKAAQPSVITPSVPQPPAAPVVPEAPSVHQPPAAPVAPEVPSAPQRPAAPV 552
Query: 458 LPSKPSVLSNSSTGVQPVSRSVSTTSHPPWCPE 360
+P PSV + V P + SV P PE
Sbjct: 553 VPEAPSVPQRPAVPVVPEALSVPQPPVAPVAPE 585
Score = 27.1 bits (57), Expect = 2.9
Identities = 20/70 (28%), Positives = 27/70 (38%)
Frame = -2
Query: 569 EPANQMVKCDPPSWQVHGLLYAVPVVTSYPRM*TRPSLPSKPSVLSNSSTGVQPVSRSVS 390
+P V + PS + VP S P+ P +P PSV + V P + SV
Sbjct: 606 QPPVAPVAPEVPSVPQRPAVPVVPEAPSVPQPPAAPVVPEVPSVPQRPAVPVVPEAPSVP 665
Query: 389 TTSHPPWCPE 360
P PE
Sbjct: 666 QPPAAPVVPE 675
Score = 27.1 bits (57), Expect = 2.9
Identities = 18/49 (36%), Positives = 21/49 (42%)
Frame = -2
Query: 503 VPVVTSYPRM*TRPSLPSKPSVLSNSSTGVQPVSRSVSTTSHPPWCPEA 357
VP V S P+ P +P PSV + V P SV P PEA
Sbjct: 643 VPEVPSVPQRPAVPVVPEAPSVPQPPAAPVVPEVPSVPQPPAVPVVPEA 691
Score = 26.6 bits (56), Expect = 3.9
Identities = 25/96 (26%), Positives = 35/96 (36%), Gaps = 2/96 (2%)
Frame = -2
Query: 641 APVXSAEKAYHEQLSVAEITNACFEPANQMVKCDP--PSWQVHGLLYAVPVVTSYPRM*T 468
APV + ++ +V + A P + P PS + VP S P+
Sbjct: 550 APVVPEAPSVPQRPAVPVVPEALSVPQPPVAPVAPEVPSVPQPPVAPVVPEAPSVPQPPV 609
Query: 467 RPSLPSKPSVLSNSSTGVQPVSRSVSTTSHPPWCPE 360
P P PSV + V P + SV P PE
Sbjct: 610 APVAPEVPSVPQRPAVPVVPEAPSVPQPPAAPVVPE 645
Score = 25.4 bits (53), Expect = 9.0
Identities = 17/48 (35%), Positives = 20/48 (41%)
Frame = -2
Query: 500 PVVTSYPRM*TRPSLPSKPSVLSNSSTGVQPVSRSVSTTSHPPWCPEA 357
P V S P+ P +P PSV + V P SV P PEA
Sbjct: 614 PEVPSVPQRPAVPVVPEAPSVPQPPAAPVVPEVPSVPQRPAVPVVPEA 661
>SPCC965.04c |||mitochondrial inner membrane i-AAA protease complex
subunit Yme1 |Schizosaccharomyces pombe|chr 3|||Manual
Length = 709
Score = 28.3 bits (60), Expect = 1.3
Identities = 21/66 (31%), Positives = 29/66 (43%), Gaps = 2/66 (3%)
Frame = -2
Query: 293 GLALTTSSTSCTPSVLSCTGTSVRVWRRESSPKPVRTWLPS--RRITKKSAWTPLKARVR 120
G+ TS TS T S S++ S+P P W P+ S+ TP+ V
Sbjct: 148 GVPKFTSDTSSTVSSTPSLNHSLQNSMPPSTPTPPPVWAPTIVSSALGTSSKTPVYVVVD 207
Query: 119 EPKSTK 102
EP+ TK
Sbjct: 208 EPRFTK 213
>SPAC22G7.06c |ura1||carbamoyl-phosphate synthase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2244
Score = 27.1 bits (57), Expect = 2.9
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = -2
Query: 599 SVAEITNACFEPANQMVKCDPPSWQV 522
SV ++T ACFEP+ V P W +
Sbjct: 800 SVTKVTCACFEPSLDYVVVKIPRWDL 825
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 26.6 bits (56), Expect = 3.9
Identities = 14/36 (38%), Positives = 18/36 (50%), Gaps = 4/36 (11%)
Frame = -3
Query: 625 PRRPTMNSFPSPR----SQTHASSPPTRW*NATPRH 530
P RP + + P P+ S HA PP + NA P H
Sbjct: 1356 PVRPAVPTSPKPQIPDSSNVHAPPPPVQPMNAMPSH 1391
>SPAC1B3.15c |||membrane transporter|Schizosaccharomyces pombe|chr
1|||Manual
Length = 628
Score = 26.2 bits (55), Expect = 5.1
Identities = 14/32 (43%), Positives = 21/32 (65%), Gaps = 3/32 (9%)
Frame = -2
Query: 461 SLPSKPSV---LSNSSTGVQPVSRSVSTTSHP 375
+LP KPS+ +++S V+P S STTS+P
Sbjct: 5 TLPPKPSISPSIASSFPTVKPFSSQNSTTSNP 36
>SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr
2|||Manual
Length = 1217
Score = 26.2 bits (55), Expect = 5.1
Identities = 26/101 (25%), Positives = 40/101 (39%)
Frame = -2
Query: 500 PVVTSYPRM*TRPSLPSKPSVLSNSSTGVQPVSRSVSTTSHPPWCPEATWPRFNVXXXXX 321
PVV + P T+P S P+ S + PVS + T + PP A R N
Sbjct: 988 PVVQNKPAA-TKPV--SMPAAKSKPAPMANPVSTAQQTQNRPP--APAMQARPNTTQAAA 1042
Query: 320 XXXXXXPKLGLALTTSSTSCTPSVLSCTGTSVRVWRRESSP 198
+ A T S++ PS ++ +S + S+P
Sbjct: 1043 PVTSTTTTIKQATTVSASKPAPSTVTSAASSPSNISKPSAP 1083
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 25.8 bits (54), Expect = 6.8
Identities = 16/49 (32%), Positives = 25/49 (51%)
Frame = -3
Query: 700 PSSRXTWXLTPVSTSHWSRTRQSXLPRRPTMNSFPSPRSQTHASSPPTR 554
P+++ P S + T +S +P P N+ PSP S + AS+ P R
Sbjct: 1232 PTAKAPPVPAPSSEAPSVSTPRSSVPS-PHSNASPSPTSSSMASAAPAR 1279
>SPAC222.10c |byr4||two-component GAP Byr4|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 665
Score = 25.4 bits (53), Expect = 9.0
Identities = 13/34 (38%), Positives = 19/34 (55%), Gaps = 2/34 (5%)
Frame = -2
Query: 464 PSLPSKPSVLSNSST--GVQPVSRSVSTTSHPPW 369
P PS+P+++SN ST G+Q V V + W
Sbjct: 531 PISPSRPALISNISTKKGIQVVGNMVYDPTRLRW 564
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,785,120
Number of Sequences: 5004
Number of extensions: 59476
Number of successful extensions: 240
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 210
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 238
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 367316502
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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