Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP15_T7_J17
         (664 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    27   1.8  
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    27   1.8  
SPBC1347.05c |||DNAJ domain protein Scj1|Schizosaccharomyces pom...    26   5.6  

>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 15/57 (26%), Positives = 18/57 (31%), Gaps = 4/57 (7%)
 Frame = -1

Query: 517 PPPXXGEKXXX----PPPFFXGGGXPXXXXFXXXXKXXXPPPKNPPXRXXXGPPTPP 359
           PPP    +       PPP   G   P         +   PP   PP      PP+ P
Sbjct: 376 PPPLSSSRAVSNPPAPPPAIPGRSAPALPPLGNASRTSTPPVPTPPSLPPSAPPSLP 432


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 10/18 (55%), Positives = 10/18 (55%)
 Frame = -1

Query: 412 PPPKNPPXRXXXGPPTPP 359
           PPP  PP     GPP PP
Sbjct: 762 PPPPPPPGVAGAGPPPPP 779



 Score = 26.2 bits (55), Expect = 4.2
 Identities = 10/21 (47%), Positives = 10/21 (47%)
 Frame = +3

Query: 513 GGXXXXXPPXKXXGXXPPPPP 575
           GG     PP    G  PPPPP
Sbjct: 759 GGPPPPPPPPGVAGAGPPPPP 779



 Score = 25.4 bits (53), Expect = 7.4
 Identities = 10/26 (38%), Positives = 11/26 (42%)
 Frame = +3

Query: 498 SPXXGGGXXXXXPPXKXXGXXPPPPP 575
           +P  GG      PP       PPPPP
Sbjct: 755 APIMGGPPPPPPPPGVAGAGPPPPPP 780


>SPBC1347.05c |||DNAJ domain protein Scj1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 381

 Score = 25.8 bits (54), Expect = 5.6
 Identities = 13/37 (35%), Positives = 14/37 (37%)
 Frame = +3

Query: 312 PXNXKIFXGIXXXXXKGGVGGPXXXLKGGFXGGGXXF 422
           P   KI+         G  GGP      GF GGG  F
Sbjct: 62  PEQRKIYDAYGEEGLNGQPGGPGGGPGEGFPGGGFGF 98


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,716,086
Number of Sequences: 5004
Number of extensions: 28014
Number of successful extensions: 64
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 35
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 57
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 301829700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)