Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP15_T7_J15
         (641 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    25   0.60 
SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein Cap1|S...    25   0.67 
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    27   2.3  
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    26   4.0  

>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 25.0 bits (52), Expect(2) = 0.60
 Identities = 8/12 (66%), Positives = 8/12 (66%)
 Frame = -1

Query: 545 PXGGXXPPPPPP 510
           P G   PPPPPP
Sbjct: 5   PPGNPPPPPPPP 16



 Score = 22.2 bits (45), Expect(2) = 0.60
 Identities = 7/10 (70%), Positives = 7/10 (70%)
 Frame = -1

Query: 527 PPPPPPXXXF 498
           PPPPPP   F
Sbjct: 9   PPPPPPPPGF 18



 Score = 21.8 bits (44), Expect(2) = 9.8
 Identities = 7/12 (58%), Positives = 7/12 (58%)
 Frame = -1

Query: 548 PPXGGXXPPPPP 513
           PP     PPPPP
Sbjct: 5   PPGNPPPPPPPP 16



 Score = 21.0 bits (42), Expect(2) = 9.8
 Identities = 6/6 (100%), Positives = 6/6 (100%)
 Frame = -1

Query: 527 PPPPPP 510
           PPPPPP
Sbjct: 24  PPPPPP 29


>SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein
           Cap1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 551

 Score = 25.0 bits (52), Expect(2) = 0.67
 Identities = 8/10 (80%), Positives = 8/10 (80%)
 Frame = -1

Query: 539 GGXXPPPPPP 510
           GG  PPPPPP
Sbjct: 303 GGLPPPPPPP 312



 Score = 22.2 bits (45), Expect(2) = 0.67
 Identities = 7/10 (70%), Positives = 7/10 (70%)
 Frame = -1

Query: 527 PPPPPPXXXF 498
           PPPPPP   F
Sbjct: 309 PPPPPPSNDF 318


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 9/13 (69%), Positives = 9/13 (69%)
 Frame = -1

Query: 548 PPXGGXXPPPPPP 510
           PP G   PPPPPP
Sbjct: 354 PPQGRSAPPPPPP 366


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 26.2 bits (55), Expect = 4.0
 Identities = 9/13 (69%), Positives = 9/13 (69%)
 Frame = -1

Query: 548 PPXGGXXPPPPPP 510
           P  GG  PPPPPP
Sbjct: 756 PIMGGPPPPPPPP 768



 Score = 25.0 bits (52), Expect = 9.3
 Identities = 10/15 (66%), Positives = 10/15 (66%), Gaps = 2/15 (13%)
 Frame = -1

Query: 548 PPXG--GXXPPPPPP 510
           PP G  G  PPPPPP
Sbjct: 766 PPPGVAGAGPPPPPP 780


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,418,128
Number of Sequences: 5004
Number of extensions: 17782
Number of successful extensions: 82
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 65
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 287744314
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)