Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP15_T7_J11
         (1297 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       26   0.82 
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    23   5.8  

>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 25.8 bits (54), Expect = 0.82
 Identities = 12/40 (30%), Positives = 12/40 (30%)
 Frame = +3

Query: 1086 PXPXXXPPXXPPPPPXXXPPXPXXXPXXXPXXXXPPXPXP 1205
            P P   P   P  P    PP P   P        PP   P
Sbjct: 21   PGPQPSPHQSPQAPQRGSPPNPSQGPPPGGPPGAPPSQNP 60



 Score = 25.4 bits (53), Expect = 1.1
 Identities = 11/34 (32%), Positives = 11/34 (32%)
 Frame = +3

Query: 1116 PPPPPXXXPPXPXXXPXXXPXXXXPPXPXPXPPP 1217
            P P P   P  P       P    PP   P  PP
Sbjct: 23   PQPSPHQSPQAPQRGSPPNPSQGPPPGGPPGAPP 56



 Score = 23.8 bits (49), Expect = 3.3
 Identities = 11/34 (32%), Positives = 11/34 (32%)
 Frame = +1

Query: 1054 PXPXXXXPPXPPXPPXPPPXXPPXXPXXPPPXPP 1155
            P P     P  P    PP       P  PP  PP
Sbjct: 23   PQPSPHQSPQAPQRGSPPNPSQGPPPGGPPGAPP 56



 Score = 23.8 bits (49), Expect = 3.3
 Identities = 12/32 (37%), Positives = 12/32 (37%), Gaps = 2/32 (6%)
 Frame = +1

Query: 1204 PXPPPXPXLPXXX--PXXSXXXPPXXPPXXPP 1293
            P P   P  P     P  S   PP  PP  PP
Sbjct: 25   PSPHQSPQAPQRGSPPNPSQGPPPGGPPGAPP 56


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
            channel protein.
          Length = 428

 Score = 23.0 bits (47), Expect = 5.8
 Identities = 8/16 (50%), Positives = 8/16 (50%)
 Frame = +1

Query: 1075 PPXPPXPPXPPPXXPP 1122
            PP P  PP PP    P
Sbjct: 338  PPKPAPPPPPPSSSGP 353



 Score = 22.6 bits (46), Expect = 7.7
 Identities = 7/10 (70%), Positives = 7/10 (70%)
 Frame = +3

Query: 1188 PPXPXPXPPP 1217
            PP P P PPP
Sbjct: 338  PPKPAPPPPP 347


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.315    0.161    0.590 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 295,183
Number of Sequences: 438
Number of extensions: 14202
Number of successful extensions: 43
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 40
length of database: 146,343
effective HSP length: 60
effective length of database: 120,063
effective search space used: 44543373
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.7 bits)