Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP15_T7_J10
         (1013 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    32   0.15 
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    29   1.0  
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    28   1.8  
SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase Y|Schizosacch...    27   4.2  

>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 31.9 bits (69), Expect = 0.15
 Identities = 11/17 (64%), Positives = 11/17 (64%)
 Frame = -3

Query: 582 PPPPXXXKXXQPPPPPP 532
           PPPP      QPPPPPP
Sbjct: 13  PPPPGFEPPSQPPPPPP 29



 Score = 27.9 bits (59), Expect = 2.4
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = -2

Query: 583 PPPPPXXKXXTTXPPPP 533
           PPPPP  +  +  PPPP
Sbjct: 12  PPPPPGFEPPSQPPPPP 28



 Score = 27.5 bits (58), Expect = 3.2
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = -1

Query: 584 PPPPPXXXKXNNXPPPP 534
           PPPPP   +  + PPPP
Sbjct: 11  PPPPPPGFEPPSQPPPP 27


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 29.1 bits (62), Expect = 1.0
 Identities = 10/17 (58%), Positives = 10/17 (58%)
 Frame = -3

Query: 582 PPPPXXXKXXQPPPPPP 532
           PPPP       PPPPPP
Sbjct: 764 PPPPPGVAGAGPPPPPP 780



 Score = 29.1 bits (62), Expect = 1.0
 Identities = 10/17 (58%), Positives = 10/17 (58%)
 Frame = -3

Query: 582 PPPPXXXKXXQPPPPPP 532
           PPPP       PPPPPP
Sbjct: 765 PPPPGVAGAGPPPPPPP 781



 Score = 28.7 bits (61), Expect = 1.4
 Identities = 11/27 (40%), Positives = 11/27 (40%)
 Frame = -1

Query: 614 PPRXXXXXXXPPPPPXXXKXNNXPPPP 534
           PP        PPPPP        PPPP
Sbjct: 753 PPAPIMGGPPPPPPPPGVAGAGPPPPP 779



 Score = 27.9 bits (59), Expect = 2.4
 Identities = 11/27 (40%), Positives = 11/27 (40%)
 Frame = -1

Query: 614 PPRXXXXXXXPPPPPXXXKXNNXPPPP 534
           PP        PPPPP        PPPP
Sbjct: 752 PPPAPIMGGPPPPPPPPGVAGAGPPPP 778



 Score = 25.8 bits (54), Expect = 9.7
 Identities = 9/17 (52%), Positives = 9/17 (52%)
 Frame = -3

Query: 582 PPPPXXXKXXQPPPPPP 532
           PPP        PPPPPP
Sbjct: 766 PPPGVAGAGPPPPPPPP 782


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 28.3 bits (60), Expect = 1.8
 Identities = 13/42 (30%), Positives = 14/42 (33%)
 Frame = -2

Query: 658 PPPXXXXXXXX*KNAPXXXXXXXXXPPPPPXXKXXTTXPPPP 533
           PPP          + P         PPPPP     T   PPP
Sbjct: 337 PPPPPPPRSNAAGSIPLPPQGRSAPPPPPPRSAPSTGRQPPP 378


>SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase
           Y|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1002

 Score = 27.1 bits (57), Expect = 4.2
 Identities = 13/44 (29%), Positives = 14/44 (31%)
 Frame = -2

Query: 658 PPPXXXXXXXX*KNAPXXXXXXXXXPPPPPXXKXXTTXPPPPXK 527
           PPP            P         PPPP   +     PPPP K
Sbjct: 300 PPPMHHEPGEHMPPPPMHHEPGEHMPPPPMHHEPGEHMPPPPFK 343



 Score = 25.8 bits (54), Expect = 9.7
 Identities = 9/17 (52%), Positives = 10/17 (58%)
 Frame = -3

Query: 582 PPPPXXXKXXQPPPPPP 532
           PPPP   K  +  PPPP
Sbjct: 208 PPPPMHHKPGEHMPPPP 224


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.317    0.147    0.459 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,755,896
Number of Sequences: 5004
Number of extensions: 21049
Number of successful extensions: 167
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 77
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 527257104
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)