Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP15_T7_J03
         (988 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    31   0.25 
SPAC1782.09c |clp1|flp1|Cdc14-related protein phosphatase Clp1/F...    27   5.4  
SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr...    26   7.1  

>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 31.1 bits (67), Expect = 0.25
 Identities = 33/148 (22%), Positives = 38/148 (25%), Gaps = 3/148 (2%)
 Frame = +1

Query: 190 PHPNPXTRXPXWXPHTAQG---PXKXXPQQAPXKTKXPXPKWEXQXQKTXGXTAXRGGPX 360
           P P P +      P   QG   P    P+ AP   + P P        +           
Sbjct: 339 PPPPPRSNAAGSIPLPPQGRSAPPPPPPRSAPSTGRQPPPL-------SSSRAVSNPPAP 391

Query: 361 PXAXXAHDHPXXPXQGXQQXNRDXPXXPXXARXSXRXPPNXXPPKPPXTXQXTXPXPPHX 540
           P A      P  P  G        P  P         PP+  P  PP         PP  
Sbjct: 392 PPAIPGRSAPALPPLGNASRT-STPPVPTPPSLPPSAPPSLPPSAPPSLPMGAPAAPPLP 450

Query: 541 XKXPXXSXXPXPRXTQATPXXPXGRHXP 624
              P     P P    A P  P     P
Sbjct: 451 PSAPI--APPLPAGMPAAPPLPPAAPAP 476



 Score = 25.8 bits (54), Expect = 9.4
 Identities = 22/86 (25%), Positives = 27/86 (31%), Gaps = 7/86 (8%)
 Frame = +1

Query: 340 AXRGGPXPXAXXAHDHPXXPXQGXQQXNRDXPXXPXXARX----SXRXPP---NXXPPKP 498
           A +  P P    +  +   P  G    N   P  P   R     S   PP   +  PP P
Sbjct: 306 ANKKRPPPPPPPSRRNRGKPPIGNGSSNSSLPPPPPPPRSNAAGSIPLPPQGRSAPPPPP 365

Query: 499 PXTXQXTXPXPPHXXKXPXXSXXPXP 576
           P +   T   PP        S  P P
Sbjct: 366 PRSAPSTGRQPPPLSSSRAVSNPPAP 391


>SPAC1782.09c |clp1|flp1|Cdc14-related protein phosphatase
           Clp1/Flp1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 537

 Score = 26.6 bits (56), Expect = 5.4
 Identities = 17/63 (26%), Positives = 26/63 (41%)
 Frame = +2

Query: 158 PHKXPXPXTHSHTQTXXRGXPHGXXTPHKDRARXGHNKPXXKQXHQXPSGKXNXKKRREX 337
           P + P   T+  +Q+     P    TP + R   GHN P  ++     S K N K +   
Sbjct: 364 PPRHPLNATNGTSQSNI-STPLPEPTPGQPRKVSGHNPPSARRLPSASSVKFNEKLKNAS 422

Query: 338 RPS 346
           + S
Sbjct: 423 KQS 425


>SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1275

 Score = 26.2 bits (55), Expect = 7.1
 Identities = 10/21 (47%), Positives = 11/21 (52%)
 Frame = +3

Query: 474 PEPXTPKTPXXXPXHPXPTPP 536
           P P TP +P     HP P PP
Sbjct: 155 PLPETPVSPGGSLVHPLPRPP 175


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.307    0.127    0.417 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,178,504
Number of Sequences: 5004
Number of extensions: 26916
Number of successful extensions: 56
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 41
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 56
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 509282430
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.6 bits)