Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP15_T7_J03
(988 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U41538-2|AAG00010.1| 997|Caenorhabditis elegans Hypothetical pr... 41 0.001
Z98866-26|CAM33505.1| 559|Caenorhabditis elegans Hypothetical p... 35 0.10
U10438-9|AAU87834.1| 616|Caenorhabditis elegans Hypothetical pr... 33 0.31
AF000298-11|AAM97960.1| 518|Caenorhabditis elegans Prion-like-(... 33 0.41
AF000298-10|AAM97961.1| 539|Caenorhabditis elegans Prion-like-(... 33 0.41
AF000298-8|AAC48255.2| 524|Caenorhabditis elegans Prion-like-(q... 33 0.41
U41543-12|AAZ91345.1| 401|Caenorhabditis elegans Groundhog (hed... 32 0.72
AF099921-1|AAC68807.1| 1286|Caenorhabditis elegans Hypothetical ... 31 0.96
U41557-2|AAA83301.1| 309|Caenorhabditis elegans Hypothetical pr... 31 1.3
AF039052-9|AAF98625.1| 302|Caenorhabditis elegans Hypothetical ... 31 1.7
AF003386-9|AAB54259.1| 1621|Caenorhabditis elegans Hypothetical ... 31 1.7
U53155-5|AAC48270.1| 303|Caenorhabditis elegans Collagen protei... 30 2.2
AB072926-1|BAB69889.1| 303|Caenorhabditis elegans collagen prot... 30 2.2
Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical pr... 30 2.9
U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA bi... 30 2.9
Z98866-8|CAB11562.2| 425|Caenorhabditis elegans Hypothetical pr... 29 3.9
L10986-3|AAA28018.1| 650|Caenorhabditis elegans Abnormal cell m... 28 8.9
L10986-2|AAK84523.2| 667|Caenorhabditis elegans Abnormal cell m... 28 8.9
L10986-1|AAR25648.1| 779|Caenorhabditis elegans Abnormal cell m... 28 8.9
>U41538-2|AAG00010.1| 997|Caenorhabditis elegans Hypothetical
protein R04E5.8a protein.
Length = 997
Score = 41.1 bits (92), Expect = 0.001
Identities = 35/149 (23%), Positives = 47/149 (31%), Gaps = 8/149 (5%)
Frame = +2
Query: 170 PXPXTHSHTQTXXRGXPHGXXTPHKDRARXGHNKPXXKQXHQXPSGKXNXKKRREXRPS- 346
P P + H PH PH A G+ P ++ HQ P+ + + P
Sbjct: 70 PPPYPYQHPHQPPPAHPHHLQHPHP-YAYPGYPVPG-QEGHQVPAPQHGDHEASPPPPPP 127
Query: 347 -----AGGXTXXHXXPTTTXXXPXKAXSXXTETDXXXPXXHGXAXXTPRTXDPQNPXXPX 511
AGG + P P P TP + +P+NP
Sbjct: 128 PRKSRAGGSSPPPPPPPRVPRTPPPRSPPPRRPPMTPPSPQRRPPRTPPSPEPRNPPRTP 187
Query: 512 XXPXPXPPTXPKXHXRAA--XPXPGXHKP 592
P P PP H R A P H+P
Sbjct: 188 PSPIPPPPPRLNSHDRRALRARRPMVHRP 216
Score = 38.7 bits (86), Expect = 0.006
Identities = 36/131 (27%), Positives = 42/131 (32%)
Frame = +1
Query: 232 HTAQGPXKXXPQQAPXKTKXPXPKWEXQXQKTXGXTAXRGGPXPXAXXAHDHPXXPXQGX 411
HT G P Q P + P P Q A G P P H P P G
Sbjct: 64 HTYGGYPPPYPYQHPHQ---PPPAHPHHLQHPHPY-AYPGYPVP-GQEGHQVPA-PQHGD 117
Query: 412 QQXNRDXPXXPXXARXSXRXPPNXXPPKPPXTXQXTXPXPPHXXKXPXXSXXPXPRXTQA 591
+ + P P +R PP PP+ P T P P P PR
Sbjct: 118 HEASPPPPPPPRKSRAGGSSPPPPPPPRVPRTPPPRSPPPRRPPMTPPSPQRRPPR---- 173
Query: 592 TPXXPXGRHXP 624
TP P R+ P
Sbjct: 174 TPPSPEPRNPP 184
Score = 33.1 bits (72), Expect = 0.31
Identities = 28/114 (24%), Positives = 35/114 (30%)
Frame = +1
Query: 193 HPNPXTRXPXWXPHTAQGPXKXXPQQAPXKTKXPXPKWEXQXQKTXGXTAXRGGPXPXAX 372
HP+P P + +G PQ + P P +K+ GG P
Sbjct: 91 HPHPYA-YPGYPVPGQEGHQVPAPQHGDHEASPPPPP---PPRKSRA-----GGSSPPPP 141
Query: 373 XAHDHPXXPXQGXQQXNRDXPXXPXXARXSXRXPPNXXPPKPPXTXQXTXPXPP 534
P P R P R R PP+ P PP T P PP
Sbjct: 142 PPPRVPRTPPPRSPPPRRPPMTPPSPQRRPPRTPPSPEPRNPPRTPPSPIPPPP 195
>Z98866-26|CAM33505.1| 559|Caenorhabditis elegans Hypothetical
protein Y49E10.29 protein.
Length = 559
Score = 34.7 bits (76), Expect = 0.10
Identities = 56/282 (19%), Positives = 70/282 (24%), Gaps = 8/282 (2%)
Frame = +1
Query: 130 QPQTXRXTCAAQXTTSXDXQPHPNPXTRXPXWXPHTAQGPXKXXPQQAPXKTKXPXPKWE 309
QPQ + Q Q P P + P Q P K QQAP + P PK
Sbjct: 210 QPQQAQAQPVVQQAPPVQ-QASPKPVAQPVQQQP-VVQAPPKPIVQQAPVVQQAPPPK-- 265
Query: 310 XQXQKTXGXTAXRGGPXPXAXXA----HDHPXXPXQGXQQXNRDXPXXPXXARXSXR--- 468
Q Q P P A P P + P P + R
Sbjct: 266 -QQQAQAQPVQQPPNPAPVVQQASAPVQQAPPKPVPQQTPPVQQAPPKPAVQQAPTRAAP 324
Query: 469 XPPNXXPPKPPXTXQXTXPXPPHXXKXPXXSXXPXPRXTQATPXXPXGRHXPXQRRXXTT 648
PP P + P Q + P P P QA P P + P R+
Sbjct: 325 APPKPAPQQAPPVQQNPPKPAVQQAQAPVVQQAPAPPVQQA-PPKPTPQQAPPVRQNPPM 383
Query: 649 TAXXXXXXXXXXXXNXXXXXXXXXXXXXXXXPQSXTNPPTPRQD-XXXNXPTPHXXXTXX 825
A P+ +P P Q T
Sbjct: 384 PAVQQAPSSQQATQAPPKPAPQQAPPVQQNPPKPTPSPAPPAQKAQPVTQQQASAPPTSP 443
Query: 826 EAPTXQPGXXTXRXXXTHQQKKNPPEXRXPRXGGTPXXNXNP 951
AP P T + + P + P P P
Sbjct: 444 SAPVQAPNTPTQKASSQDPIVQQDPPPKEPSISSEPTTTKKP 485
Score = 29.5 bits (63), Expect = 3.9
Identities = 35/159 (22%), Positives = 43/159 (27%), Gaps = 2/159 (1%)
Frame = +1
Query: 127 PQPQTXRXTCAAQXTTSXDXQPHPNPXTRXPXWXPHTAQGPXKXXPQQAPXKTKXPXPKW 306
P Q Q ++ Q P P P P Q P K QQAP + PK
Sbjct: 273 PVQQPPNPAPVVQQASAPVQQAPPKPV---PQQTPPVQQAPPKPAVQQAPTRAAPAPPKP 329
Query: 307 EXQXQKTXGXTAXRGGPXPXAXXAHDHPXXPXQGXQQXNRDXPXXPXXARXSXRXPPNXX 486
Q + P P A P A + PP
Sbjct: 330 APQ----QAPPVQQNPPKPAVQQAQAPVVQQAPAPPVQQAPPKPTPQQAPPVRQNPPMPA 385
Query: 487 PPKPPXTXQXT--XPXPPHXXKXPXXSXXPXPRXTQATP 597
+ P + Q T P P P P P + A P
Sbjct: 386 VQQAPSSQQATQAPPKPAPQQAPPVQQNPPKPTPSPAPP 424
>U10438-9|AAU87834.1| 616|Caenorhabditis elegans Hypothetical
protein B0280.13 protein.
Length = 616
Score = 33.1 bits (72), Expect = 0.31
Identities = 24/102 (23%), Positives = 29/102 (28%)
Frame = +1
Query: 229 PHTAQGPXKXXPQQAPXKTKXPXPKWEXQXQKTXGXTAXRGGPXPXAXXAHDHPXXPXQG 408
P T P AP K P T T + P P + + P
Sbjct: 433 PKTPTRVAPPPPPSAPPTIKFPISTGP-SYSSTTPPTTPKPAPPPPSRIPNPSPSPQPAE 491
Query: 409 XQQXNRDXPXXPXXARXSXRXPPNXXPPKPPXTXQXTXPXPP 534
+ P P A S PP PP PP + PP
Sbjct: 492 VSKSPPPPPPLPPIATPSSVPPPPPPPPPPPPALEQEISGPP 533
>AF000298-11|AAM97960.1| 518|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform b protein.
Length = 518
Score = 32.7 bits (71), Expect = 0.41
Identities = 19/57 (33%), Positives = 22/57 (38%), Gaps = 3/57 (5%)
Frame = +1
Query: 472 PPNXXPPK--PPXTXQXTXPXPPHXXK-XPXXSXXPXPRXTQATPXXPXGRHXPXQR 633
PP PPK PP + P PP P + P P T + P P G P R
Sbjct: 237 PPPPPPPKGSPPLAGSGSPPPPPAAGSPPPPRTGSPPPPPTGSPPPPPAGGSPPPPR 293
Score = 31.1 bits (67), Expect = 1.3
Identities = 25/111 (22%), Positives = 30/111 (27%)
Frame = +2
Query: 398 PXKAXSXXTETDXXXPXXHGXAXXTPRTXDPQNPXXPXXXPXPXPPTXPKXHXRAAXPXP 577
P K + P + PRT P P P P P PP A P
Sbjct: 242 PPKGSPPLAGSGSPPPPPAAGSPPPPRTGSP--PPPPTGSP-PPPPAGGSPPPPRAGSPP 298
Query: 578 GXHKPHXXXXXXGTXHXSXGXXPXPXXHPPNPQXPXXKTNXXKQKPPXNNP 730
P G P P P P K ++ PP +P
Sbjct: 299 PPPPPRGSPPTGSLPPPQAGGSPPPAGTGSPPPPPRQKRQAPERSPPTGSP 349
>AF000298-10|AAM97961.1| 539|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform c protein.
Length = 539
Score = 32.7 bits (71), Expect = 0.41
Identities = 19/57 (33%), Positives = 22/57 (38%), Gaps = 3/57 (5%)
Frame = +1
Query: 472 PPNXXPPK--PPXTXQXTXPXPPHXXK-XPXXSXXPXPRXTQATPXXPXGRHXPXQR 633
PP PPK PP + P PP P + P P T + P P G P R
Sbjct: 258 PPPPPPPKGSPPLAGSGSPPPPPAAGSPPPPRTGSPPPPPTGSPPPPPAGGSPPPPR 314
Score = 31.1 bits (67), Expect = 1.3
Identities = 25/111 (22%), Positives = 30/111 (27%)
Frame = +2
Query: 398 PXKAXSXXTETDXXXPXXHGXAXXTPRTXDPQNPXXPXXXPXPXPPTXPKXHXRAAXPXP 577
P K + P + PRT P P P P P PP A P
Sbjct: 263 PPKGSPPLAGSGSPPPPPAAGSPPPPRTGSP--PPPPTGSP-PPPPAGGSPPPPRAGSPP 319
Query: 578 GXHKPHXXXXXXGTXHXSXGXXPXPXXHPPNPQXPXXKTNXXKQKPPXNNP 730
P G P P P P K ++ PP +P
Sbjct: 320 PPPPPRGSPPTGSLPPPQAGGSPPPAGTGSPPPPPRQKRQAPERSPPTGSP 370
>AF000298-8|AAC48255.2| 524|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform a protein.
Length = 524
Score = 32.7 bits (71), Expect = 0.41
Identities = 19/57 (33%), Positives = 22/57 (38%), Gaps = 3/57 (5%)
Frame = +1
Query: 472 PPNXXPPK--PPXTXQXTXPXPPHXXK-XPXXSXXPXPRXTQATPXXPXGRHXPXQR 633
PP PPK PP + P PP P + P P T + P P G P R
Sbjct: 243 PPPPPPPKGSPPLAGSGSPPPPPAAGSPPPPRTGSPPPPPTGSPPPPPAGGSPPPPR 299
Score = 31.1 bits (67), Expect = 1.3
Identities = 25/111 (22%), Positives = 30/111 (27%)
Frame = +2
Query: 398 PXKAXSXXTETDXXXPXXHGXAXXTPRTXDPQNPXXPXXXPXPXPPTXPKXHXRAAXPXP 577
P K + P + PRT P P P P P PP A P
Sbjct: 248 PPKGSPPLAGSGSPPPPPAAGSPPPPRTGSP--PPPPTGSP-PPPPAGGSPPPPRAGSPP 304
Query: 578 GXHKPHXXXXXXGTXHXSXGXXPXPXXHPPNPQXPXXKTNXXKQKPPXNNP 730
P G P P P P K ++ PP +P
Sbjct: 305 PPPPPRGSPPTGSLPPPQAGGSPPPAGTGSPPPPPRQKRQAPERSPPTGSP 355
>U41543-12|AAZ91345.1| 401|Caenorhabditis elegans Groundhog
(hedgehog-like family)protein 7 protein.
Length = 401
Score = 31.9 bits (69), Expect = 0.72
Identities = 27/119 (22%), Positives = 30/119 (25%)
Frame = +1
Query: 268 QAPXKTKXPXPKWEXQXQKTXGXTAXRGGPXPXAXXAHDHPXXPXQGXQQXNRDXPXXPX 447
Q P P P + TA P P A P P Q P P
Sbjct: 25 QPPPPPPPPKPAPYVEQSAQPQQTAPPPPPAPYPQQAVPAPAPPPAPYPQHAVPAPAPPL 84
Query: 448 XARXSXRXPPNXXPPKPPXTXQXTXPXPPHXXKXPXXSXXPXPRXTQATPXXPXGRHXP 624
+ P PP P P PP P P Q P P + P
Sbjct: 85 ASYPQNAVPVPAPPPAPYPQHAVPAPAPPPAPYPQHAVPAPAPYQQQPPPPPPPPHYPP 143
Score = 29.1 bits (62), Expect = 5.1
Identities = 23/82 (28%), Positives = 29/82 (35%)
Frame = +3
Query: 471 PPEPXTPKTPXXXPXHPXPTPPXXQKXTXEXXTXTPXXTSHTXXXXXXAPPTXAXXPNHX 650
PP P P P P +P P PP + P H+ APP P +
Sbjct: 133 PPPPPPPHYPPPPPHYP-PPPPAPHSAYIDHSAPRPAYIEHS------APP---PQPQYP 182
Query: 651 RXXTPQTPXTXQXKQTXXNKNP 716
+ PQ P Q +Q N P
Sbjct: 183 QQQPPQYP--QQRQQHSYNAGP 202
>AF099921-1|AAC68807.1| 1286|Caenorhabditis elegans Hypothetical
protein M01E10.2 protein.
Length = 1286
Score = 31.5 bits (68), Expect = 0.96
Identities = 25/84 (29%), Positives = 27/84 (32%), Gaps = 1/84 (1%)
Frame = +3
Query: 480 PXTPKTPXXXPXHPXPTPPXXQKXTXEXXTXTPXX-TSHTXXXXXXAPPTXAXXPNHXRX 656
P T P P TP + T P + T PPT P
Sbjct: 328 PPTEAPPTEAPPTTQTTPTSWTRPTDGRVHVMPGIRVTETPPTIQTPPPTTQTPPTTQTS 387
Query: 657 XTPQTPXTXQXKQTXXNKNPPXTT 728
T QTP T KQT PP TT
Sbjct: 388 STTQTPRT---KQTWAPWTPPTTT 408
>U41557-2|AAA83301.1| 309|Caenorhabditis elegans Hypothetical
protein C50F7.5 protein.
Length = 309
Score = 31.1 bits (67), Expect = 1.3
Identities = 20/87 (22%), Positives = 25/87 (28%)
Frame = +2
Query: 470 TPRTXDPQNPXXPXXXPXPXPPTXPKXHXRAAXPXPGXHKPHXXXXXXGTXHXSXGXXPX 649
+P DP + P P P P + + P PG P G
Sbjct: 194 SPGPVDPSDEPSPSGPPSPGPVDPSEDPKPSEPPSPGPVDP-SDEPSPSDPPGPPGPPGP 252
Query: 650 PXXHPPNPQXPXXKTNXXKQKPPXNNP 730
P PP P P + PP P
Sbjct: 253 PTRRPPGPPGPPTRRPPGPPGPPTRRP 279
>AF039052-9|AAF98625.1| 302|Caenorhabditis elegans Hypothetical
protein T22D1.2 protein.
Length = 302
Score = 30.7 bits (66), Expect = 1.7
Identities = 32/139 (23%), Positives = 39/139 (28%)
Frame = +1
Query: 196 PNPXTRXPXWXPHTAQGPXKXXPQQAPXKTKXPXPKWEXQXQKTXGXTAXRGGPXPXAXX 375
P P T P + P + P P E Q T G + R P P
Sbjct: 138 PPPPTGEPQDLSGEGNASRRPPPPPKGTGSPPPPPTGEPQDLSTEGNASRRPPPPPKGTG 197
Query: 376 AHDHPXXPXQGXQQXNRDXPXXPXXARXSXRXPPNXXPPKPPXTXQXTXPXPPHXXKXPX 555
P P G Q D +R P P PP T + P
Sbjct: 198 T---PPPPPTGEPQ---DLSAEGYASRRPPPPPKGTGSPTPPPTGE---PQDLSGEGNAS 248
Query: 556 XSXXPXPRXTQATPXXPXG 612
P P+ T + P P G
Sbjct: 249 RRPPPPPKGTGSPPPPPTG 267
>AF003386-9|AAB54259.1| 1621|Caenorhabditis elegans Hypothetical
protein F59E12.9 protein.
Length = 1621
Score = 30.7 bits (66), Expect = 1.7
Identities = 19/64 (29%), Positives = 22/64 (34%)
Frame = +1
Query: 415 QXNRDXPXXPXXARXSXRXPPNXXPPKPPXTXQXTXPXPPHXXKXPXXSXXPXPRXTQAT 594
Q N + +R S PP PP PP + T P PP P S P
Sbjct: 1319 QANHEDSDSFSTSRSSSPSPPPPPPPPPPPSDDLT-PVPPPPPPPPTMSKAPTGVPLPVP 1377
Query: 595 PXXP 606
P P
Sbjct: 1378 PPPP 1381
>U53155-5|AAC48270.1| 303|Caenorhabditis elegans Collagen protein
43 protein.
Length = 303
Score = 30.3 bits (65), Expect = 2.2
Identities = 25/91 (27%), Positives = 27/91 (29%)
Frame = +1
Query: 352 GPXPXAXXAHDHPXXPXQGXQQXNRDXPXXPXXARXSXRXPPNXXPPKPPXTXQXTXPXP 531
GP P P P + P P A PP P KP P P
Sbjct: 107 GP-PGPAGVPGKPGKPGRPGAPGQPGVPGKPPTAPCEPTTPP---PCKPCPQGPPGPPGP 162
Query: 532 PHXXKXPXXSXXPXPRXTQATPXXPXGRHXP 624
P P + P T ATP P R P
Sbjct: 163 PGAPGDPGEAGTPGRPGTDATPGLPGPRGPP 193
Score = 29.1 bits (62), Expect = 5.1
Identities = 33/140 (23%), Positives = 35/140 (25%)
Frame = +1
Query: 196 PNPXTRXPXWXPHTAQGPXKXXPQQAPXKTKXPXPKWEXQXQKTXGXTAXRGGPXPXAXX 375
P T P P P P AP T G RG P P
Sbjct: 140 PCEPTTPPPCKPCPQGPPGPPGPPGAPGDPGEAGTPGRPGTDATPGLPGPRGPPGPPGEA 199
Query: 376 AHDHPXXPXQGXQQXNRDXPXXPXXARXSXRXPPNXXPPKPPXTXQXTXPXPPHXXKXPX 555
P Q P P A + P PP PP P P K
Sbjct: 200 GQPGPQGDAGTPAQSEPLTPGAPGEAGDAG--PAG--PPGPPGAPGNDGPPGPPGPKGSP 255
Query: 556 XSXXPXPRXTQATPXXPXGR 615
P QA P P G+
Sbjct: 256 GPDGPAGVDGQAGPPGPPGQ 275
>AB072926-1|BAB69889.1| 303|Caenorhabditis elegans collagen
protein.
Length = 303
Score = 30.3 bits (65), Expect = 2.2
Identities = 25/91 (27%), Positives = 27/91 (29%)
Frame = +1
Query: 352 GPXPXAXXAHDHPXXPXQGXQQXNRDXPXXPXXARXSXRXPPNXXPPKPPXTXQXTXPXP 531
GP P P P + P P A PP P KP P P
Sbjct: 107 GP-PGPAGVPGKPGKPGRPGAPGQPGVPGKPPTAPCEPTTPP---PCKPCPQGPPGPPGP 162
Query: 532 PHXXKXPXXSXXPXPRXTQATPXXPXGRHXP 624
P P + P T ATP P R P
Sbjct: 163 PGAPGDPGEAGTPGRPGTDATPGLPGPRGPP 193
Score = 29.1 bits (62), Expect = 5.1
Identities = 33/140 (23%), Positives = 35/140 (25%)
Frame = +1
Query: 196 PNPXTRXPXWXPHTAQGPXKXXPQQAPXKTKXPXPKWEXQXQKTXGXTAXRGGPXPXAXX 375
P T P P P P AP T G RG P P
Sbjct: 140 PCEPTTPPPCKPCPQGPPGPPGPPGAPGDPGEAGTPGRPGTDATPGLPGPRGPPGPPGEA 199
Query: 376 AHDHPXXPXQGXQQXNRDXPXXPXXARXSXRXPPNXXPPKPPXTXQXTXPXPPHXXKXPX 555
P Q P P A + P PP PP P P K
Sbjct: 200 GQPGPQGDAGTPAQSEPLTPGAPGEAGDAG--PAG--PPGPPGAPGNDGPPGPPGPKGSP 255
Query: 556 XSXXPXPRXTQATPXXPXGR 615
P QA P P G+
Sbjct: 256 GPDGPAGVDGQAGPPGPPGQ 275
>Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical
protein C08B11.5 protein.
Length = 388
Score = 29.9 bits (64), Expect = 2.9
Identities = 31/129 (24%), Positives = 34/129 (26%), Gaps = 3/129 (2%)
Frame = +1
Query: 241 QGPXKXXPQQAPXKTKXPXPKWEXQXQKTXGXTAXRGGPXPXAXXAHDHPXXPXQGXQQX 420
QG P P T P P T G T P P + P P G
Sbjct: 257 QGQYPPVPPPPPSVTPMPPPM-----PPTPGMTPRP--PPPPSSGMWPPPPPPPPGRTPG 309
Query: 421 NRDXPXXPXXARXSXRXPPNXX---PPKPPXTXQXTXPXPPHXXKXPXXSXXPXPRXTQA 591
P P S PP PP PP PP + P P +
Sbjct: 310 PPGMPGMPPPPPPSRFGPPGMGGMPPPPPPGMRYPGGMPPPPPPRYPSAGPGMYPPPPPS 369
Query: 592 TPXXPXGRH 618
P P H
Sbjct: 370 RPPAPPSGH 378
>U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA
binding protein protein.
Length = 398
Score = 29.9 bits (64), Expect = 2.9
Identities = 31/129 (24%), Positives = 34/129 (26%), Gaps = 3/129 (2%)
Frame = +1
Query: 241 QGPXKXXPQQAPXKTKXPXPKWEXQXQKTXGXTAXRGGPXPXAXXAHDHPXXPXQGXQQX 420
QG P P T P P T G T P P + P P G
Sbjct: 267 QGQYPPVPPPPPSVTPMPPPM-----PPTPGMTPRP--PPPPSSGMWPPPPPPPPGRTPG 319
Query: 421 NRDXPXXPXXARXSXRXPPNXX---PPKPPXTXQXTXPXPPHXXKXPXXSXXPXPRXTQA 591
P P S PP PP PP PP + P P +
Sbjct: 320 PPGMPGMPPPPPPSRFGPPGMGGMPPPPPPGMRYPGGMPPPPPPRYPSAGPGMYPPPPPS 379
Query: 592 TPXXPXGRH 618
P P H
Sbjct: 380 RPPAPPSGH 388
>Z98866-8|CAB11562.2| 425|Caenorhabditis elegans Hypothetical
protein Y49E10.10 protein.
Length = 425
Score = 29.5 bits (63), Expect = 3.9
Identities = 37/161 (22%), Positives = 43/161 (26%), Gaps = 1/161 (0%)
Frame = +1
Query: 475 PNXXPPKPPXTXQXTXPXPPHXXKXPXXSXXPXPRXTQATPXXPXGRHXPXQRRXXTTTA 654
P P PP T P P P + P P T+A P P + TT A
Sbjct: 170 PTTEAPPPPTTK--APPPPTTKAPPPPTTKAPPPPTTKAPP-------PPTTNKEVTTVA 220
Query: 655 XXXXXXXXXXXXNXXXXXXXXXXXXXXXXPQSXTNP-PTPRQDXXXNXPTPHXXXTXXEA 831
P P PTP + + P P T E
Sbjct: 221 PVPKPAPVTAPAPNPPAPENTTAKVETTKPTKAAPPAPTPVPNPVPSPPPPPANTTVTEE 280
Query: 832 PTXQPGXXTXRXXXTHQQKKNPPEXRXPRXGGTPXXNXNPP 954
T P T +NP P TP NPP
Sbjct: 281 KTTVPPATDEPAPKTVATTENP----KPIDNSTPQKPPNPP 317
>L10986-3|AAA28018.1| 650|Caenorhabditis elegans Abnormal cell
migration protein10, isoform b protein.
Length = 650
Score = 28.3 bits (60), Expect = 8.9
Identities = 18/51 (35%), Positives = 21/51 (41%), Gaps = 2/51 (3%)
Frame = +1
Query: 388 PXXPXQGXQQXNRDXPXXPXXARXSXRXPPNXXPPKP--PXTXQXTXPXPP 534
P P Q + + P P A R PP PPKP P T + P PP
Sbjct: 565 PTIP-QEESDSDEEFPAPPPVASVM-RMPPPVTPPKPCTPLTSKKAPPPPP 613
>L10986-2|AAK84523.2| 667|Caenorhabditis elegans Abnormal cell
migration protein10, isoform a protein.
Length = 667
Score = 28.3 bits (60), Expect = 8.9
Identities = 18/51 (35%), Positives = 21/51 (41%), Gaps = 2/51 (3%)
Frame = +1
Query: 388 PXXPXQGXQQXNRDXPXXPXXARXSXRXPPNXXPPKP--PXTXQXTXPXPP 534
P P Q + + P P A R PP PPKP P T + P PP
Sbjct: 582 PTIP-QEESDSDEEFPAPPPVASVM-RMPPPVTPPKPCTPLTSKKAPPPPP 630
>L10986-1|AAR25648.1| 779|Caenorhabditis elegans Abnormal cell
migration protein10, isoform c protein.
Length = 779
Score = 28.3 bits (60), Expect = 8.9
Identities = 18/51 (35%), Positives = 21/51 (41%), Gaps = 2/51 (3%)
Frame = +1
Query: 388 PXXPXQGXQQXNRDXPXXPXXARXSXRXPPNXXPPKP--PXTXQXTXPXPP 534
P P Q + + P P A R PP PPKP P T + P PP
Sbjct: 694 PTIP-QEESDSDEEFPAPPPVASVM-RMPPPVTPPKPCTPLTSKKAPPPPP 742
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.307 0.127 0.417
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,541,548
Number of Sequences: 27780
Number of extensions: 218646
Number of successful extensions: 852
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 437
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 708
length of database: 12,740,198
effective HSP length: 82
effective length of database: 10,462,238
effective search space used: 2573710548
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.6 bits)
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