Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP15_T7_J01
         (740 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BT011339-1|AAR96131.1|  465|Drosophila melanogaster RH62603p pro...   276   2e-74
AF016835-1|AAC26144.1|  416|Drosophila melanogaster ribosomal pr...   276   2e-74
AE014297-1265|AAF54609.1|  403|Drosophila melanogaster CG4863-PE...   276   2e-74
AE014297-1264|AAN13496.1|  403|Drosophila melanogaster CG4863-PB...   276   2e-74
AE014297-1262|AAF54610.2|  416|Drosophila melanogaster CG4863-PA...   276   2e-74
AE014297-3352|AAF56159.2|  350|Drosophila melanogaster CG16710-P...    30   3.8  

>BT011339-1|AAR96131.1|  465|Drosophila melanogaster RH62603p
           protein.
          Length = 465

 Score =  276 bits (677), Expect = 2e-74
 Identities = 133/171 (77%), Positives = 142/171 (83%)
 Frame = -3

Query: 660 EXFGCXWVSPKGKGIQRXHFXLAHXRKVPRKTHKGXRKVACIGAXHPXRVSFXVARAGQK 481
           E   C  V+ KGKG +       H +K+PRKTHKG RKVACIGA HP RVS  VARAGQK
Sbjct: 226 EMIDCVGVT-KGKGFKGVTSRW-HTKKLPRKTHKGLRKVACIGAWHPSRVSTTVARAGQK 283

Query: 480 GYHHRTEMNXKIYRIGQGIHKKDGKVIKNNASTEYDLXEKSITPMGGFPHYGEVNNDFVM 301
           GYHHRTE+N KIYRIG GIH KDGKVIKNNASTEYDL +KSITPMGGFPHYGEVNNDFVM
Sbjct: 284 GYHHRTEINKKIYRIGAGIHTKDGKVIKNNASTEYDLTDKSITPMGGFPHYGEVNNDFVM 343

Query: 300 IKGCCMGPKKRIITLRKSLRVHTKRAALEKINLKFIDTSSKFGHGRFQTPA 148
           IKGCC+G KKRIITLRKSL  HTKR+ALE+I LKFIDTSSK GHGRFQTPA
Sbjct: 344 IKGCCIGSKKRIITLRKSLLKHTKRSALEQIKLKFIDTSSKMGHGRFQTPA 394



 Score = 29.5 bits (63), Expect = 5.0
 Identities = 12/16 (75%), Positives = 14/16 (87%)
 Frame = -1

Query: 143 KAAFMGTLKKDRIREE 96
           K AFMG LKKDR++EE
Sbjct: 396 KLAFMGPLKKDRLKEE 411


>AF016835-1|AAC26144.1|  416|Drosophila melanogaster ribosomal
           protein L3 protein.
          Length = 416

 Score =  276 bits (677), Expect = 2e-74
 Identities = 133/171 (77%), Positives = 142/171 (83%)
 Frame = -3

Query: 660 EXFGCXWVSPKGKGIQRXHFXLAHXRKVPRKTHKGXRKVACIGAXHPXRVSFXVARAGQK 481
           E   C  V+ KGKG +       H +K+PRKTHKG RKVACIGA HP RVS  VARAGQK
Sbjct: 215 EMIDCVGVT-KGKGFKGVTSRW-HTKKLPRKTHKGLRKVACIGAWHPSRVSTTVARAGQK 272

Query: 480 GYHHRTEMNXKIYRIGQGIHKKDGKVIKNNASTEYDLXEKSITPMGGFPHYGEVNNDFVM 301
           GYHHRTE+N KIYRIG GIH KDGKVIKNNASTEYDL +KSITPMGGFPHYGEVNNDFVM
Sbjct: 273 GYHHRTEINKKIYRIGAGIHTKDGKVIKNNASTEYDLTDKSITPMGGFPHYGEVNNDFVM 332

Query: 300 IKGCCMGPKKRIITLRKSLRVHTKRAALEKINLKFIDTSSKFGHGRFQTPA 148
           IKGCC+G KKRIITLRKSL  HTKR+ALE+I LKFIDTSSK GHGRFQTPA
Sbjct: 333 IKGCCIGSKKRIITLRKSLLKHTKRSALEQIKLKFIDTSSKMGHGRFQTPA 383



 Score = 29.5 bits (63), Expect = 5.0
 Identities = 12/16 (75%), Positives = 14/16 (87%)
 Frame = -1

Query: 143 KAAFMGTLKKDRIREE 96
           K AFMG LKKDR++EE
Sbjct: 385 KLAFMGPLKKDRLKEE 400


>AE014297-1265|AAF54609.1|  403|Drosophila melanogaster CG4863-PE,
           isoform E protein.
          Length = 403

 Score =  276 bits (677), Expect = 2e-74
 Identities = 133/171 (77%), Positives = 142/171 (83%)
 Frame = -3

Query: 660 EXFGCXWVSPKGKGIQRXHFXLAHXRKVPRKTHKGXRKVACIGAXHPXRVSFXVARAGQK 481
           E   C  V+ KGKG +       H +K+PRKTHKG RKVACIGA HP RVS  VARAGQK
Sbjct: 202 EMIDCVGVT-KGKGFKGVTSRW-HTKKLPRKTHKGLRKVACIGAWHPSRVSTTVARAGQK 259

Query: 480 GYHHRTEMNXKIYRIGQGIHKKDGKVIKNNASTEYDLXEKSITPMGGFPHYGEVNNDFVM 301
           GYHHRTE+N KIYRIG GIH KDGKVIKNNASTEYDL +KSITPMGGFPHYGEVNNDFVM
Sbjct: 260 GYHHRTEINKKIYRIGAGIHTKDGKVIKNNASTEYDLTDKSITPMGGFPHYGEVNNDFVM 319

Query: 300 IKGCCMGPKKRIITLRKSLRVHTKRAALEKINLKFIDTSSKFGHGRFQTPA 148
           IKGCC+G KKRIITLRKSL  HTKR+ALE+I LKFIDTSSK GHGRFQTPA
Sbjct: 320 IKGCCIGSKKRIITLRKSLLKHTKRSALEQIKLKFIDTSSKMGHGRFQTPA 370



 Score = 29.5 bits (63), Expect = 5.0
 Identities = 12/16 (75%), Positives = 14/16 (87%)
 Frame = -1

Query: 143 KAAFMGTLKKDRIREE 96
           K AFMG LKKDR++EE
Sbjct: 372 KLAFMGPLKKDRLKEE 387


>AE014297-1264|AAN13496.1|  403|Drosophila melanogaster CG4863-PB,
           isoform B protein.
          Length = 403

 Score =  276 bits (677), Expect = 2e-74
 Identities = 133/171 (77%), Positives = 142/171 (83%)
 Frame = -3

Query: 660 EXFGCXWVSPKGKGIQRXHFXLAHXRKVPRKTHKGXRKVACIGAXHPXRVSFXVARAGQK 481
           E   C  V+ KGKG +       H +K+PRKTHKG RKVACIGA HP RVS  VARAGQK
Sbjct: 202 EMIDCVGVT-KGKGFKGVTSRW-HTKKLPRKTHKGLRKVACIGAWHPSRVSTTVARAGQK 259

Query: 480 GYHHRTEMNXKIYRIGQGIHKKDGKVIKNNASTEYDLXEKSITPMGGFPHYGEVNNDFVM 301
           GYHHRTE+N KIYRIG GIH KDGKVIKNNASTEYDL +KSITPMGGFPHYGEVNNDFVM
Sbjct: 260 GYHHRTEINKKIYRIGAGIHTKDGKVIKNNASTEYDLTDKSITPMGGFPHYGEVNNDFVM 319

Query: 300 IKGCCMGPKKRIITLRKSLRVHTKRAALEKINLKFIDTSSKFGHGRFQTPA 148
           IKGCC+G KKRIITLRKSL  HTKR+ALE+I LKFIDTSSK GHGRFQTPA
Sbjct: 320 IKGCCIGSKKRIITLRKSLLKHTKRSALEQIKLKFIDTSSKMGHGRFQTPA 370



 Score = 29.5 bits (63), Expect = 5.0
 Identities = 12/16 (75%), Positives = 14/16 (87%)
 Frame = -1

Query: 143 KAAFMGTLKKDRIREE 96
           K AFMG LKKDR++EE
Sbjct: 372 KLAFMGPLKKDRLKEE 387


>AE014297-1262|AAF54610.2|  416|Drosophila melanogaster CG4863-PA,
           isoform A protein.
          Length = 416

 Score =  276 bits (677), Expect = 2e-74
 Identities = 133/171 (77%), Positives = 142/171 (83%)
 Frame = -3

Query: 660 EXFGCXWVSPKGKGIQRXHFXLAHXRKVPRKTHKGXRKVACIGAXHPXRVSFXVARAGQK 481
           E   C  V+ KGKG +       H +K+PRKTHKG RKVACIGA HP RVS  VARAGQK
Sbjct: 215 EMIDCVGVT-KGKGFKGVTSRW-HTKKLPRKTHKGLRKVACIGAWHPSRVSTTVARAGQK 272

Query: 480 GYHHRTEMNXKIYRIGQGIHKKDGKVIKNNASTEYDLXEKSITPMGGFPHYGEVNNDFVM 301
           GYHHRTE+N KIYRIG GIH KDGKVIKNNASTEYDL +KSITPMGGFPHYGEVNNDFVM
Sbjct: 273 GYHHRTEINKKIYRIGAGIHTKDGKVIKNNASTEYDLTDKSITPMGGFPHYGEVNNDFVM 332

Query: 300 IKGCCMGPKKRIITLRKSLRVHTKRAALEKINLKFIDTSSKFGHGRFQTPA 148
           IKGCC+G KKRIITLRKSL  HTKR+ALE+I LKFIDTSSK GHGRFQTPA
Sbjct: 333 IKGCCIGSKKRIITLRKSLLKHTKRSALEQIKLKFIDTSSKMGHGRFQTPA 383



 Score = 29.5 bits (63), Expect = 5.0
 Identities = 12/16 (75%), Positives = 14/16 (87%)
 Frame = -1

Query: 143 KAAFMGTLKKDRIREE 96
           K AFMG LKKDR++EE
Sbjct: 385 KLAFMGPLKKDRLKEE 400


>AE014297-3352|AAF56159.2|  350|Drosophila melanogaster CG16710-PA
           protein.
          Length = 350

 Score = 29.9 bits (64), Expect = 3.8
 Identities = 16/56 (28%), Positives = 30/56 (53%), Gaps = 5/56 (8%)
 Frame = +3

Query: 21  ALSNVYFHGRHLRLRSSRWGCGSRSFFANTILLECTH-----ECSLXQPASGIDHD 173
           AL  + F  R+ +L+ + WG   +  ++N +L    +     ECSL +P+ G+D +
Sbjct: 221 ALLRLKFPVRNHKLQIAGWGLSHKQGYSNVLLQAYVNGRNADECSLSEPSLGLDKE 276


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 32,361,260
Number of Sequences: 53049
Number of extensions: 663136
Number of successful extensions: 1247
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1199
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1242
length of database: 24,988,368
effective HSP length: 83
effective length of database: 20,585,301
effective search space used: 3355404063
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)