Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP15_T7_I19
         (831 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC8E4.05c |||fumarate lyase superfamily|Schizosaccharomyces po...    29   1.1  
SPCC622.10c |||exocyst complex subunit Sec5 |Schizosaccharomyces...    26   5.7  
SPBC16D10.02 |trm11||tRNA |Schizosaccharomyces pombe|chr 2|||Manual    25   10.0 
SPBC28E12.03 |rga4||GTPase activating protein Rga4|Schizosacchar...    25   10.0 

>SPBC8E4.05c |||fumarate lyase superfamily|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 447

 Score = 28.7 bits (61), Expect = 1.1
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = -3

Query: 322 LTTRKLAERLGVQQPALYWHFRNKR 248
           +  +KLAE LG+ QP + WH    R
Sbjct: 210 MVQQKLAEELGLLQPEIAWHTERDR 234


>SPCC622.10c |||exocyst complex subunit Sec5 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 815

 Score = 26.2 bits (55), Expect = 5.7
 Identities = 10/44 (22%), Positives = 22/44 (50%)
 Frame = +2

Query: 269 VKRRLLNPQPFRQFACRQTVYADLVQQVQGRHGSLYSAATLSCL 400
           + +  + P  F+ F+  +T+Y +L   +     + +  AT SC+
Sbjct: 703 ISKLSIQPPTFQLFSTLETIYLELKDSMPPNEAADWMIATTSCM 746


>SPBC16D10.02 |trm11||tRNA |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 452

 Score = 25.4 bits (53), Expect = 10.0
 Identities = 18/58 (31%), Positives = 29/58 (50%)
 Frame = -2

Query: 209 ESYAFGAESRRRLALISDRECPQLQAGAARLPPAQWHHVLELQVAAATRVSLEGPQAY 36
           E++      + +L++ISD E  QLQ   +   P     VLE +     R ++EGP+ Y
Sbjct: 140 ETFGTRRTMKEQLSIISDFEYMQLQGPVSMHNPQHVFTVLENR-----RNNVEGPKVY 192


>SPBC28E12.03 |rga4||GTPase activating protein
           Rga4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 933

 Score = 25.4 bits (53), Expect = 10.0
 Identities = 9/30 (30%), Positives = 16/30 (53%)
 Frame = +2

Query: 218 HGFGQCVEQRPLVPEVPVKRRLLNPQPFRQ 307
           H F Q   +   +P++P    ++NP P R+
Sbjct: 296 HAFVQSPTENGTLPQLPKNESVVNPPPLRR 325


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,537,950
Number of Sequences: 5004
Number of extensions: 48037
Number of successful extensions: 104
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 100
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 104
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 408446760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)