Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP15_T7_I14
         (709 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    30   0.28 
SPBC15D4.04 |gpt2|gpt, alg7|UDP-N-acetylglucosamine--dolichyl-ph...    29   0.49 
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    28   1.1  
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    27   2.0  
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    27   3.5  
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    26   4.6  
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe...    26   4.6  

>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 30.3 bits (65), Expect = 0.28
 Identities = 23/83 (27%), Positives = 24/83 (28%)
 Frame = +2

Query: 221  PXKAPGXXKXGAEXPPXPXAXXFRXTKXPPXFXGXXGAPGXFXTGXGKXXAPKNXRGGXP 400
            P  AP   K     PP P       +  PP       AP       G    PK   G  P
Sbjct: 1136 PSGAPPVPKPSVAAPPVPAP-----SGAPPVPKPSVAAPPVPAPSSGIPPVPKPAAGVPP 1190

Query: 401  PXXPXSPPPXPXXXXXXXRXPPP 469
               P   PP P         PPP
Sbjct: 1191 VPPPSEAPPVPKPSVGVPPVPPP 1213



 Score = 27.1 bits (57), Expect = 2.6
 Identities = 16/58 (27%), Positives = 19/58 (32%), Gaps = 1/58 (1%)
 Frame = +1

Query: 379  KXAGGXXPXPPXX-SPPXPXXXXXXXXXPPPXXPIRXXLPXXQXPHXXXXXSQTPXXP 549
            K A G  P PP   +PP P         PPP        P    P      ++ P  P
Sbjct: 1183 KPAAGVPPVPPPSEAPPVPKPSVGVPPVPPPSTAPPVPTPSAGLPPVPVPTAKAPPVP 1240


>SPBC15D4.04 |gpt2|gpt,
           alg7|UDP-N-acetylglucosamine--dolichyl-phosphateN-
           acetylglucosaminephosphotransferase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 446

 Score = 29.5 bits (63), Expect = 0.49
 Identities = 14/34 (41%), Positives = 17/34 (50%)
 Frame = +2

Query: 20  YFAARVYCLSAPFYKYLRPRKHGTFPSRGSWAXV 121
           YF   +  +   FYKYL P  +   PS GS A V
Sbjct: 81  YFMCMIIFIPVLFYKYLVPNHNPNLPSDGSVAEV 114


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 21/94 (22%), Positives = 24/94 (25%)
 Frame = +3

Query: 420 PPLPXXXXXPEXGSPPQXPHSXXXXXPTXXTPXXXSXSDSXXPPXPXKXXXPSXLXXXXX 599
           PP P     P   +P   P        T   P   S   S  P  P        +     
Sbjct: 388 PPAPPPAI-PGRSAPALPPLGNASRTSTPPVPTPPSLPPSAPPSLPPSAPPSLPMGAPAA 446

Query: 600 PXXPGXXAXSTXPXLSXPIXPPXPXXPXGGPPPP 701
           P  P     +       P  PP P      PP P
Sbjct: 447 PPLPPSAPIAPPLPAGMPAAPPLPPAAPAPPPAP 480


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 13/34 (38%), Positives = 14/34 (41%)
 Frame = +3

Query: 600 PXXPGXXAXSTXPXLSXPIXPPXPXXPXGGPPPP 701
           P  P      T      P+ PP P    GGPPPP
Sbjct: 733 PPPPPAVIVPTPAPAPIPVPPPAPIM--GGPPPP 764



 Score = 25.8 bits (54), Expect = 6.1
 Identities = 11/23 (47%), Positives = 12/23 (52%), Gaps = 1/23 (4%)
 Frame = +3

Query: 636 PXLSXPIXPPXPXXPXG-GPPPP 701
           P +  P  PP P    G GPPPP
Sbjct: 756 PIMGGPPPPPPPPGVAGAGPPPP 778


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 9/17 (52%), Positives = 9/17 (52%)
 Frame = +3

Query: 651  PIXPPXPXXPXGGPPPP 701
            P  PP P  P   PPPP
Sbjct: 1718 PSAPPMPAGPPSAPPPP 1734


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 26.2 bits (55), Expect = 4.6
 Identities = 10/24 (41%), Positives = 10/24 (41%)
 Frame = +2

Query: 398 PPXXPXSPPPXPXXXXXXXRXPPP 469
           PP  P  PPP P         PPP
Sbjct: 5   PPGNPPPPPPPPGFEPPSQPPPPP 28


>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 273

 Score = 26.2 bits (55), Expect = 4.6
 Identities = 11/22 (50%), Positives = 11/22 (50%)
 Frame = -1

Query: 700 GGGGPPXGXXGXGGXMGXXRXG 635
           G GGPP G  G GG  G    G
Sbjct: 196 GSGGPPPGPGGFGGFGGFGGEG 217


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,596,568
Number of Sequences: 5004
Number of extensions: 19610
Number of successful extensions: 80
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 35
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 65
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 329179816
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)