Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP15_T7_I11
         (773 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_0686 - 30900748-30902167,30903442-30904742                       30   1.8  
01_07_0021 - 40533864-40534583,40534779-40534814,40534909-405350...    29   5.4  
02_03_0120 + 15463163-15465250                                         28   9.5  

>02_05_0686 - 30900748-30902167,30903442-30904742
          Length = 906

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 17/50 (34%), Positives = 17/50 (34%)
 Frame = +3

Query: 564 PXXXXPPAXXXXAGAPXPXRHLXHWXPNXXXAXGPXPXPPGXXPVPPXXP 713
           P    PP     A AP P        P      GP P PP   P PP  P
Sbjct: 311 PAPPPPPPPKPAAAAPPPPPP-PKAAPPPPPPKGPPPPPPAKGPPPPPPP 359



 Score = 29.9 bits (64), Expect = 2.3
 Identities = 17/50 (34%), Positives = 17/50 (34%)
 Frame = +3

Query: 564 PXXXXPPAXXXXAGAPXPXRHLXHWXPNXXXAXGPXPXPPGXXPVPPXXP 713
           P    PP       AP P        P    A GP P PP   P PP  P
Sbjct: 321 PAAAAPPPPPPPKAAPPPPP--PKGPPPPPPAKGPPPPPPPKGPSPPPPP 368


>01_07_0021 -
           40533864-40534583,40534779-40534814,40534909-40535048,
           40535837-40535922,40536430-40536653,40536770-40536865,
           40538766-40538833,40539945-40540055,40540799-40540955
          Length = 545

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 14/50 (28%), Positives = 16/50 (32%)
 Frame = +3

Query: 579 PPAXXXXAGAPXPXRHLXHWXPNXXXAXGPXPXPPGXXPVPPXXPXXNXR 728
           PP        P P     +  P      GP   PP   P PP  P  N +
Sbjct: 496 PPMNYPMVNIPPPFPSAPNTPPGFQGLAGPFYGPPYPAPPPPPPPPMNRK 545


>02_03_0120 + 15463163-15465250
          Length = 695

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 14/46 (30%), Positives = 18/46 (39%), Gaps = 3/46 (6%)
 Frame = +3

Query: 606 APXPXRHLXHWXPNXXXAX---GPXPXPPGXXPVPPXXPXXNXRXI 734
           AP P +++    PN         P P PP   P PP  P    R +
Sbjct: 283 APPPTKYIGPMPPNNQPLPPPPSPSPSPPPPSPPPPPHPNHRRRHL 328


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,543,234
Number of Sequences: 37544
Number of extensions: 186233
Number of successful extensions: 806
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 630
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 763
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2068401984
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)