Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP15_T7_I11
         (773 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z46676-8|CAB60993.2|  388|Caenorhabditis elegans Hypothetical pr...    28   8.5  
U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def...    28   8.5  
U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def...    28   8.5  
U24189-3|AAC47514.1|  398|Caenorhabditis elegans RRM-type RNA bi...    28   8.5  
AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.    28   8.5  

>Z46676-8|CAB60993.2|  388|Caenorhabditis elegans Hypothetical
           protein C08B11.5 protein.
          Length = 388

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 12/35 (34%), Positives = 13/35 (37%)
 Frame = +3

Query: 609 PXPXRHLXHWXPNXXXAXGPXPXPPGXXPVPPXXP 713
           P P      W P      G  P PPG   +PP  P
Sbjct: 287 PPPPPSSGMWPPPPPPPPGRTPGPPGMPGMPPPPP 321


>U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect
           protein 1, isoformb protein.
          Length = 1437

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 16/52 (30%), Positives = 16/52 (30%)
 Frame = +3

Query: 558 GXPXXXXPPAXXXXAGAPXPXRHLXHWXPNXXXAXGPXPXPPGXXPVPPXXP 713
           G P    P       G P P        P       P P PPG  P PP  P
Sbjct: 725 GPPPPPPPGGLPPITGGPPPPPP-PGGLPPISGGPPPPPPPPGGCPPPPPPP 775


>U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect
           protein 1, isoforma protein.
          Length = 1435

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 16/52 (30%), Positives = 16/52 (30%)
 Frame = +3

Query: 558 GXPXXXXPPAXXXXAGAPXPXRHLXHWXPNXXXAXGPXPXPPGXXPVPPXXP 713
           G P    P       G P P        P       P P PPG  P PP  P
Sbjct: 725 GPPPPPPPGGLPPITGGPPPPPP-PGGLPPISGGPPPPPPPPGGCPPPPPPP 775


>U24189-3|AAC47514.1|  398|Caenorhabditis elegans RRM-type RNA
           binding protein protein.
          Length = 398

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 12/35 (34%), Positives = 13/35 (37%)
 Frame = +3

Query: 609 PXPXRHLXHWXPNXXXAXGPXPXPPGXXPVPPXXP 713
           P P      W P      G  P PPG   +PP  P
Sbjct: 297 PPPPPSSGMWPPPPPPPPGRTPGPPGMPGMPPPPP 331


>AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.
          Length = 1018

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 16/52 (30%), Positives = 16/52 (30%)
 Frame = +3

Query: 558 GXPXXXXPPAXXXXAGAPXPXRHLXHWXPNXXXAXGPXPXPPGXXPVPPXXP 713
           G P    P       G P P        P       P P PPG  P PP  P
Sbjct: 308 GPPPPPPPGGLPPITGGPPPPPP-PGGLPPISGGPPPPPPPPGGCPPPPPPP 358


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,475,941
Number of Sequences: 27780
Number of extensions: 135085
Number of successful extensions: 364
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 284
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 349
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1861650246
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)