Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP15_T7_I04
         (904 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC685.06 |rps001|rps0-1, rpsa-1, rps0|40S ribosomal protein S0...    88   1e-18
SPAPJ698.02c |rps002|rpsa-2, rps0-2, rps0|40S ribosomal protein ...    84   2e-17
SPCC663.03 |pmd1||leptomycin efflux transporter Pmd1|Schizosacch...    27   2.8  
SPAC24C9.10c |mrp4||mitochondrial ribosomal protein subunit S2|S...    27   3.6  
SPAC27E2.06c |||methionine-tRNA ligase, mitochondrial|Schizosacc...    26   6.4  
SPCC736.06 |||aspartate-tRNA ligase|Schizosaccharomyces pombe|ch...    26   8.4  
SPAC6G10.10c |||human hmmtag2 homolog|Schizosaccharomyces pombe|...    26   8.4  

>SPBC685.06 |rps001|rps0-1, rpsa-1, rps0|40S ribosomal protein S0A
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 292

 Score = 88.2 bits (209), Expect = 1e-18
 Identities = 41/65 (63%), Positives = 49/65 (75%)
 Frame = -3

Query: 671 YVDIPVIALCXTDSPVRFVDIAIPCNTKSSHSIGLMWWLLAREVLRLXGVLPRDQRWDVV 492
           +V+IPVIALC TDS +  VDIAIP N K   SIGL+W+LLAREVLR+ G L R   WDV+
Sbjct: 141 FVNIPVIALCDTDSILNHVDIAIPTNNKGRKSIGLIWYLLAREVLRVRGTLSRSAPWDVM 200

Query: 491 VDLFF 477
            DL+F
Sbjct: 201 PDLYF 205


>SPAPJ698.02c |rps002|rpsa-2, rps0-2, rps0|40S ribosomal protein
           S0B|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 287

 Score = 84.2 bits (199), Expect = 2e-17
 Identities = 39/65 (60%), Positives = 48/65 (73%)
 Frame = -3

Query: 671 YVDIPVIALCXTDSPVRFVDIAIPCNTKSSHSIGLMWWLLAREVLRLXGVLPRDQRWDVV 492
           +V+IPVIALC TDS +  VD+AIP N K   SIGL W+LLAREVLRL G + R   W+V+
Sbjct: 142 FVNIPVIALCDTDSILNHVDVAIPINNKGYKSIGLAWYLLAREVLRLRGNISRTTAWEVM 201

Query: 491 VDLFF 477
            DL+F
Sbjct: 202 PDLYF 206


>SPCC663.03 |pmd1||leptomycin efflux transporter
           Pmd1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1362

 Score = 27.5 bits (58), Expect = 2.8
 Identities = 16/48 (33%), Positives = 21/48 (43%)
 Frame = -2

Query: 726 SL*LYWTLHKTINPLXSXICRHSCDCFVXHRLPSKICGHCYPMQHQVF 583
           SL   W +H  +  +   IC       +   L S ICG  YP+Q  VF
Sbjct: 775 SLTALWFIHSFVRTMIEIIC------LLIGILASMICGAAYPVQAAVF 816


>SPAC24C9.10c |mrp4||mitochondrial ribosomal protein subunit
           S2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 263

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 14/39 (35%), Positives = 19/39 (48%)
 Frame = -3

Query: 662 IPVIALCXTDSPVRFVDIAIPCNTKSSHSIGLMWWLLAR 546
           +P I +  TD+  R V   IP N  S     L+  LL+R
Sbjct: 203 VPTIGIIDTDADPRMVTYPIPANDDSLRCTDLIAGLLSR 241


>SPAC27E2.06c |||methionine-tRNA ligase,
           mitochondrial|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 539

 Score = 26.2 bits (55), Expect = 6.4
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = -3

Query: 653 IALCXTDSPVRFVDIAIPCNTKSSHSI 573
           + LC  +S  RF D+A+  NTK +H I
Sbjct: 85  LQLCDRNSK-RFADLAVAANTKFTHFI 110


>SPCC736.06 |||aspartate-tRNA ligase|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 611

 Score = 25.8 bits (54), Expect = 8.4
 Identities = 14/28 (50%), Positives = 16/28 (57%)
 Frame = -1

Query: 529 VVCFPVTSAGMLWLICSSXRDPEESEKD 446
           V+ FP TS+G   LI S    PEE  KD
Sbjct: 571 VIAFPKTSSGADLLIGSPSAIPEEMLKD 598


>SPAC6G10.10c |||human hmmtag2 homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 194

 Score = 25.8 bits (54), Expect = 8.4
 Identities = 16/36 (44%), Positives = 21/36 (58%), Gaps = 3/36 (8%)
 Frame = +1

Query: 481 NKSTTTSQRWSRG---STPXSLSTSRANNHHIKPIE 579
           N+S+T +++ SR    ST  S STS AN H  K  E
Sbjct: 106 NRSSTNTEKDSRSIAHSTSRSRSTSPANRHRRKEKE 141


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,969,753
Number of Sequences: 5004
Number of extensions: 50730
Number of successful extensions: 96
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 93
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 96
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 456499320
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)