Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP15_T7_I01
(935 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 33 0.076
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 32 0.13
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 30 0.54
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 29 0.71
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 27 3.8
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 32.7 bits (71), Expect = 0.076
Identities = 12/24 (50%), Positives = 12/24 (50%)
Frame = +3
Query: 849 GGPPXTPPPXXXTPPXPXPPXNPP 920
G PP PPP PP PP PP
Sbjct: 7 GNPPPPPPPPGFEPPSQPPPPPPP 30
Score = 30.7 bits (66), Expect = 0.31
Identities = 13/27 (48%), Positives = 13/27 (48%)
Frame = +3
Query: 855 PPXTPPPXXXTPPXPXPPXNPPXXPXP 935
PP PPP PP PP PP P P
Sbjct: 5 PPGNPPPPPP-PPGFEPPSQPPPPPPP 30
Score = 25.8 bits (54), Expect = 8.8
Identities = 12/27 (44%), Positives = 12/27 (44%)
Frame = +3
Query: 837 PGXXGGPPXTPPPXXXTPPXPXPPXNP 917
PG PP PPP P P PP P
Sbjct: 6 PGNPPPPP--PPPGFEPPSQPPPPPPP 30
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 31.9 bits (69), Expect = 0.13
Identities = 12/24 (50%), Positives = 12/24 (50%)
Frame = +3
Query: 849 GGPPXTPPPXXXTPPXPXPPXNPP 920
GGPP PPP P PP PP
Sbjct: 759 GGPPPPPPPPGVAGAGPPPPPPPP 782
Score = 28.3 bits (60), Expect = 1.6
Identities = 12/28 (42%), Positives = 12/28 (42%)
Frame = +3
Query: 837 PGXXGGPPXTPPPXXXTPPXPXPPXNPP 920
P G PP PPP P PP PP
Sbjct: 756 PIMGGPPPPPPPPGVAGAGPPPPPPPPP 783
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 29.9 bits (64), Expect = 0.54
Identities = 11/27 (40%), Positives = 13/27 (48%)
Frame = +3
Query: 855 PPXTPPPXXXTPPXPXPPXNPPXXPXP 935
PP + PP PP P P + P P P
Sbjct: 1710 PPMSVPPPPSAPPMPAGPPSAPPPPLP 1736
Score = 28.7 bits (61), Expect = 1.2
Identities = 14/43 (32%), Positives = 14/43 (32%), Gaps = 2/43 (4%)
Frame = +3
Query: 813 PXNXXXRXPGXXGGPPXTPPPXXXTPPXPXP--PXNPPXXPXP 935
P P P PPP PP P P PP P P
Sbjct: 1691 PVRPQSAAPPQMSAPTPPPPPMSVPPPPSAPPMPAGPPSAPPP 1733
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 29.5 bits (63), Expect = 0.71
Identities = 13/33 (39%), Positives = 13/33 (39%)
Frame = +3
Query: 837 PGXXGGPPXTPPPXXXTPPXPXPPXNPPXXPXP 935
P G PP P P PP P P P P P
Sbjct: 1153 PAPSGAPP-VPKPSVAAPPVPAPSSGIPPVPKP 1184
Score = 29.1 bits (62), Expect = 0.94
Identities = 14/41 (34%), Positives = 15/41 (36%)
Frame = +3
Query: 813 PXNXXXRXPGXXGGPPXTPPPXXXTPPXPXPPXNPPXXPXP 935
P + P G P PPP PP P P P P P
Sbjct: 1174 PSSGIPPVPKPAAGVPPVPPPSE-APPVPKPSVGVPPVPPP 1213
Score = 28.7 bits (61), Expect = 1.2
Identities = 14/33 (42%), Positives = 14/33 (42%)
Frame = +3
Query: 837 PGXXGGPPXTPPPXXXTPPXPXPPXNPPXXPXP 935
P G PP P P PP P P PP P P
Sbjct: 1115 PAPSGAPP-VPKPSVAAPPVPVPSGAPP-VPKP 1145
Score = 28.7 bits (61), Expect = 1.2
Identities = 13/33 (39%), Positives = 13/33 (39%)
Frame = +3
Query: 837 PGXXGGPPXTPPPXXXTPPXPXPPXNPPXXPXP 935
P G P P P PP P P PP P P
Sbjct: 1172 PAPSSGIPPVPKPAAGVPPVPPPSEAPP-VPKP 1203
Score = 27.5 bits (58), Expect = 2.9
Identities = 13/33 (39%), Positives = 13/33 (39%)
Frame = +3
Query: 837 PGXXGGPPXTPPPXXXTPPXPXPPXNPPXXPXP 935
P G PP P P PP P P P P P
Sbjct: 1086 PAPSGIPP-VPKPSVAAPPVPKPSVAVPPVPAP 1117
Score = 27.5 bits (58), Expect = 2.9
Identities = 12/28 (42%), Positives = 12/28 (42%)
Frame = +3
Query: 852 GPPXTPPPXXXTPPXPXPPXNPPXXPXP 935
G P P P PP P P PP P P
Sbjct: 1138 GAPPVPKPSVAAPPVPAPSGAPP-VPKP 1164
Score = 27.5 bits (58), Expect = 2.9
Identities = 14/41 (34%), Positives = 15/41 (36%)
Frame = +3
Query: 813 PXNXXXRXPGXXGGPPXTPPPXXXTPPXPXPPXNPPXXPXP 935
P + P G P PPP PP P P P P P
Sbjct: 1193 PPSEAPPVPKPSVGVPPVPPPST-APPVPTPSAGLPPVPVP 1232
Score = 26.6 bits (56), Expect = 5.0
Identities = 10/26 (38%), Positives = 10/26 (38%)
Frame = +3
Query: 858 PXTPPPXXXTPPXPXPPXNPPXXPXP 935
P P P PP P P P P P
Sbjct: 1217 PPVPTPSAGLPPVPVPTAKAPPVPAP 1242
Score = 26.2 bits (55), Expect = 6.6
Identities = 12/32 (37%), Positives = 12/32 (37%)
Frame = +3
Query: 840 GXXGGPPXTPPPXXXTPPXPXPPXNPPXXPXP 935
G PP P P P P P PP P P
Sbjct: 1058 GAPSAPPPVPAPSSEIPSIPAPSGAPP-VPAP 1088
Score = 26.2 bits (55), Expect = 6.6
Identities = 10/26 (38%), Positives = 10/26 (38%)
Frame = +3
Query: 858 PXTPPPXXXTPPXPXPPXNPPXXPXP 935
P P P PP P P P P P
Sbjct: 1169 PPVPAPSSGIPPVPKPAAGVPPVPPP 1194
Score = 26.2 bits (55), Expect = 6.6
Identities = 12/41 (29%), Positives = 13/41 (31%)
Frame = +3
Query: 813 PXNXXXRXPGXXGGPPXTPPPXXXTPPXPXPPXNPPXXPXP 935
P + P G P P P PP P P P P
Sbjct: 1212 PPSTAPPVPTPSAGLPPVPVPTAKAPPVPAPSSEAPSVSTP 1252
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 27.1 bits (57), Expect = 3.8
Identities = 11/25 (44%), Positives = 11/25 (44%)
Frame = +3
Query: 855 PPXTPPPXXXTPPXPXPPXNPPXXP 929
PP TPP P PP PP P
Sbjct: 404 PPLGNASRTSTPPVPTPPSLPPSAP 428
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.315 0.133 0.442
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,814,711
Number of Sequences: 5004
Number of extensions: 19309
Number of successful extensions: 140
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 42
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 106
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 475330268
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
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