Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP15_T7_I01
         (935 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage prot...    25   0.99 
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    25   0.99 
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       23   3.0  

>EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage protein
           protein.
          Length = 1010

 Score = 25.0 bits (52), Expect = 0.99
 Identities = 12/34 (35%), Positives = 17/34 (50%)
 Frame = +1

Query: 247 SWSEAEDEQDQQPRXWXHYQQRAVQNAAXRDXHA 348
           SWS+ + +Q QQ +        AVQ +  R  HA
Sbjct: 766 SWSQQQVQQAQQVQQQMQAAMAAVQQSQQRHQHA 799


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 25.0 bits (52), Expect = 0.99
 Identities = 9/17 (52%), Positives = 9/17 (52%)
 Frame = +3

Query: 885 TPPXPXPPXNPPXXPXP 935
           TPP P PP  PP    P
Sbjct: 337 TPPKPAPPPPPPSSSGP 353


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 23.4 bits (48), Expect = 3.0
 Identities = 10/28 (35%), Positives = 11/28 (39%)
 Frame = -1

Query: 119 PXPSGHMCXXCXXRPRSQYPFEGPXPSG 36
           P PS H       R     P +GP P G
Sbjct: 23  PQPSPHQSPQAPQRGSPPNPSQGPPPGG 50



 Score = 21.8 bits (44), Expect = 9.2
 Identities = 8/18 (44%), Positives = 8/18 (44%)
 Frame = +2

Query: 866 PPAXPXXPPTXXPPRXPP 919
           PP     PP   PP  PP
Sbjct: 39  PPNPSQGPPPGGPPGAPP 56


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.315    0.133    0.442 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 153,584
Number of Sequences: 438
Number of extensions: 2424
Number of successful extensions: 7
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 30597567
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)