Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP15_T7_H14
         (809 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z46676-8|CAB60993.2|  388|Caenorhabditis elegans Hypothetical pr...    31   1.3  
U24189-3|AAC47514.1|  398|Caenorhabditis elegans RRM-type RNA bi...    31   1.3  
Z46791-5|CAA86755.2|  948|Caenorhabditis elegans Hypothetical pr...    29   5.2  
U41538-2|AAG00010.1|  997|Caenorhabditis elegans Hypothetical pr...    28   6.9  
U39852-7|AAK39260.1|  240|Caenorhabditis elegans Ground-like (gr...    28   6.9  
AC024798-8|AAK29921.3| 1115|Caenorhabditis elegans Hypothetical ...    28   6.9  

>Z46676-8|CAB60993.2|  388|Caenorhabditis elegans Hypothetical
           protein C08B11.5 protein.
          Length = 388

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 23/90 (25%), Positives = 26/90 (28%), Gaps = 2/90 (2%)
 Frame = +2

Query: 512 PPPGXXXXXXPSPKXLPAXXXPXRPEXPQPPXL-XXXPXXXXXXRXXXXPAQPXXVRAP- 685
           PPP       P P  +P    P  P    PP +    P      R       P   R P 
Sbjct: 298 PPPPPPPGRTPGPPGMPGMPPPPPPSRFGPPGMGGMPPPPPPGMRYPGGMPPPPPPRYPS 357

Query: 686 XXPXEXPNFXXPRXPXXPXXXXLXXPXSPP 775
             P   P     R P  P    +  P  PP
Sbjct: 358 AGPGMYPPPPPSRPPAPPSGHGMIPPPPPP 387


>U24189-3|AAC47514.1|  398|Caenorhabditis elegans RRM-type RNA
           binding protein protein.
          Length = 398

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 23/90 (25%), Positives = 26/90 (28%), Gaps = 2/90 (2%)
 Frame = +2

Query: 512 PPPGXXXXXXPSPKXLPAXXXPXRPEXPQPPXL-XXXPXXXXXXRXXXXPAQPXXVRAP- 685
           PPP       P P  +P    P  P    PP +    P      R       P   R P 
Sbjct: 308 PPPPPPPGRTPGPPGMPGMPPPPPPSRFGPPGMGGMPPPPPPGMRYPGGMPPPPPPRYPS 367

Query: 686 XXPXEXPNFXXPRXPXXPXXXXLXXPXSPP 775
             P   P     R P  P    +  P  PP
Sbjct: 368 AGPGMYPPPPPSRPPAPPSGHGMIPPPPPP 397


>Z46791-5|CAA86755.2|  948|Caenorhabditis elegans Hypothetical
           protein C09G5.6 protein.
          Length = 948

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 20/77 (25%), Positives = 21/77 (27%)
 Frame = +2

Query: 545 SPKXLPAXXXPXRPEXPQPPXLXXXPXXXXXXRXXXXPAQPXXVRAPXXPXEXPNFXXPR 724
           SP    +   P  P     P     P           P  P   RAP  P   PN   PR
Sbjct: 188 SPNNRTSLYNPQPPPKTGYPTNPRVPYNPPQPNYTRQPTYPEDNRAPYKPTRSPNTPPPR 247

Query: 725 XPXXPXXXXLXXPXSPP 775
            P          P S P
Sbjct: 248 QPSGGYDSDGQTPPSSP 264


>U41538-2|AAG00010.1|  997|Caenorhabditis elegans Hypothetical
           protein R04E5.8a protein.
          Length = 997

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 17/58 (29%), Positives = 18/58 (31%), Gaps = 2/58 (3%)
 Frame = +2

Query: 512 PPPGXXXXXXPSPKXLPAXXXPXRPEXPQ--PPXLXXXPXXXXXXRXXXXPAQPXXVR 679
           PPP       P P+  P    P  P  PQ  PP     P      R    P  P   R
Sbjct: 140 PPPPPRVPRTPPPRSPPPRRPPMTPPSPQRRPPRTPPSPEPRNPPRTPPSPIPPPPPR 197


>U39852-7|AAK39260.1|  240|Caenorhabditis elegans Ground-like (grd
           related) protein 6 protein.
          Length = 240

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 16/65 (24%), Positives = 18/65 (27%)
 Frame = +2

Query: 512 PPPGXXXXXXPSPKXLPAXXXPXRPEXPQPPXLXXXPXXXXXXRXXXXPAQPXXVRAPXX 691
           PPP       P P   P    P  P  P PP +          R    P+       P  
Sbjct: 56  PPPPCPAQFCPPPPICPPPPPPPMPCPPPPPPMPRPSCPCMMQRPSFYPSYVPQYYQPMM 115

Query: 692 PXEXP 706
           P   P
Sbjct: 116 PQPMP 120


>AC024798-8|AAK29921.3| 1115|Caenorhabditis elegans Hypothetical
           protein Y48G9A.4 protein.
          Length = 1115

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 17/54 (31%), Positives = 19/54 (35%)
 Frame = +3

Query: 357 PTXEXRXXPRKXPPXPAPXPXRATPAXXXXPTXXAXXXLXTSXXXXPXXPXXPP 518
           P  E R    K PP PAP P  + P     P       L  +    P  P  PP
Sbjct: 518 PHKEQRRSTSKDPPRPAPPPVSSIP-----PPPPIAGLLAANGTNVPIPPPPPP 566


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,094,051
Number of Sequences: 27780
Number of extensions: 109450
Number of successful extensions: 416
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 295
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 390
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1987863822
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)