Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP15_T7_H13
(728 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC630.14c |tup12||transcriptional corepressor Tup12 |Schizosac... 33 0.032
SPCC1672.07 |||U3 snoRNP-associated protein Utp21 |Schizosacchar... 30 0.39
SPBC31F10.13c |hip1|hir1|hira protein Hip1|Schizosaccharomyces p... 27 2.1
SPAC18B11.10 |tup11||transcriptional corepressor Tup11|Schizosac... 27 2.7
SPBC887.04c |lub1||WD repeat protein Lub1|Schizosaccharomyces po... 26 4.8
SPBC16C6.09 |ogm4|oma4|protein O-mannosyltransferase Ogm4|Schizo... 26 6.3
SPAC4D7.05 |sum1|tif34|translation initiation factor eIF3i|Schiz... 26 6.3
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 26 6.3
SPCC16A11.02 |utp13|SPCC63.16|U3 snoRNP-associated protein Utp13... 25 8.4
SPAC227.12 |||U4/U6 x U5 tri-snRNP complex subunit Prp4 family|S... 25 8.4
>SPAC630.14c |tup12||transcriptional corepressor Tup12
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 586
Score = 33.5 bits (73), Expect = 0.032
Identities = 15/33 (45%), Positives = 18/33 (54%)
Frame = -1
Query: 527 QLHLHESCVLSXRFASCGKWFVSTGKDNLLNAW 429
QLH HE V S F+ GK+ VS DN + W
Sbjct: 453 QLHGHEESVYSVAFSPDGKYLVSGSLDNTIKLW 485
>SPCC1672.07 |||U3 snoRNP-associated protein Utp21
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 902
Score = 29.9 bits (64), Expect = 0.39
Identities = 13/37 (35%), Positives = 18/37 (48%)
Frame = -2
Query: 703 AAXDXPVRSWDLREGRQLQQXDFXXQIFSLGYCPTGD 593
A+ D +R+WDL G + SL + PTGD
Sbjct: 590 ASLDGTIRTWDLPTGHLIDSISTPSVCTSLTFAPTGD 626
>SPBC31F10.13c |hip1|hir1|hira protein Hip1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 932
Score = 27.5 bits (58), Expect = 2.1
Identities = 13/53 (24%), Positives = 23/53 (43%)
Frame = -1
Query: 584 VGMENSNVEVXHAVKPDKYQLHLHESCVLSXRFASCGKWFVSTGKDNLLNAWR 426
VG+++S + ++ H+S V F GK+F + D + WR
Sbjct: 152 VGLDSSIIVWNGTTFERLKRIEAHQSHVKGITFDPAGKYFATESDDRTIKVWR 204
>SPAC18B11.10 |tup11||transcriptional corepressor
Tup11|Schizosaccharomyces pombe|chr 1|||Manual
Length = 614
Score = 27.1 bits (57), Expect = 2.7
Identities = 20/87 (22%), Positives = 33/87 (37%), Gaps = 4/87 (4%)
Frame = -1
Query: 548 AVKPD---KYQLHLHESCVLSXRFASCGKWFVSTGKDNLLNAWRTPYGASIFQSK-EXXX 381
A+KP+ K H VLS + +W +S KD + W G S +
Sbjct: 523 AIKPEGICKATYTGHTDFVLSVAVSPDSRWGLSGSKDRSMQFWDLQTGQSYLTCQGHKNS 582
Query: 380 XXXXXXXXXDKYIVTGSGDKKATVYEV 300
+ +GSGD +A ++ +
Sbjct: 583 VISVCFSPDGRQFASGSGDLRARIWSI 609
>SPBC887.04c |lub1||WD repeat protein Lub1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 713
Score = 26.2 bits (55), Expect = 4.8
Identities = 11/35 (31%), Positives = 17/35 (48%)
Frame = -1
Query: 530 YQLHLHESCVLSXRFASCGKWFVSTGKDNLLNAWR 426
Y+LH H S V S + + S G+D + W+
Sbjct: 209 YELHGHTSFVYSLTYIHNQQLIASCGEDRTIRIWK 243
>SPBC16C6.09 |ogm4|oma4|protein O-mannosyltransferase
Ogm4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 778
Score = 25.8 bits (54), Expect = 6.3
Identities = 10/22 (45%), Positives = 15/22 (68%)
Frame = -1
Query: 182 GKPVCTYATCLYRLVCAIYVYL 117
G+ + AT L+ +VCAIY Y+
Sbjct: 193 GRLILLDATLLFSMVCAIYCYV 214
>SPAC4D7.05 |sum1|tif34|translation initiation factor
eIF3i|Schizosaccharomyces pombe|chr 1|||Manual
Length = 328
Score = 25.8 bits (54), Expect = 6.3
Identities = 9/22 (40%), Positives = 15/22 (68%)
Frame = -2
Query: 700 AXDXPVRSWDLREGRQLQQXDF 635
A D +R WD++ G+QL + +F
Sbjct: 71 AADNTMRLWDVKTGKQLYKWEF 92
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 25.8 bits (54), Expect = 6.3
Identities = 12/36 (33%), Positives = 21/36 (58%)
Frame = +2
Query: 167 YIQASRFNLYIHYNYVSLYSTFAERSLLH*HSHIVR 274
Y +AS F+LY+ Y +L + + +L+H I+R
Sbjct: 1074 YDRASAFSLYMIYRLETLRDSSSALTLMHYFDEIIR 1109
>SPCC16A11.02 |utp13|SPCC63.16|U3 snoRNP-associated protein Utp13
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 777
Score = 25.4 bits (53), Expect = 8.4
Identities = 15/51 (29%), Positives = 20/51 (39%), Gaps = 4/51 (7%)
Frame = -1
Query: 569 SNVEVXHAVKPDKYQ----LHLHESCVLSXRFASCGKWFVSTGKDNLLNAW 429
SN E + D Q L H VL+ + G W + KDN + W
Sbjct: 341 SNTEFIDVISTDGTQVFGVLEGHTDIVLTLDSSEDGVWLATGAKDNTVRLW 391
>SPAC227.12 |||U4/U6 x U5 tri-snRNP complex subunit Prp4
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 462
Score = 25.4 bits (53), Expect = 8.4
Identities = 11/30 (36%), Positives = 16/30 (53%), Gaps = 1/30 (3%)
Frame = -2
Query: 682 RSWDLREGRQLQQXD-FXXQIFSLGYCPTG 596
R WDLR G+ + D QI ++ + P G
Sbjct: 332 RIWDLRSGKSIMVLDEHIRQIVAMAWSPNG 361
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,378,900
Number of Sequences: 5004
Number of extensions: 45443
Number of successful extensions: 140
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 135
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 140
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 343230174
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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