Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP15_T7_H13
         (728 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein ...    25   0.73 
EF032397-1|ABM97933.1|  200|Apis mellifera arginine kinase protein.    24   1.7  
DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated...    24   1.7  
AF023619-1|AAC39040.1|  355|Apis mellifera arginine kinase protein.    24   1.7  

>AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein 1
           protein.
          Length = 500

 Score = 25.0 bits (52), Expect = 0.73
 Identities = 14/34 (41%), Positives = 19/34 (55%)
 Frame = +1

Query: 136 HTNLYKHVA*VHTGFPI*SIHTL*LCITLLNVRG 237
           H  LY  V+  +TGF I S   +  C +LLN+ G
Sbjct: 370 HLFLYPEVSSTYTGFGIQSTDFVGDCSSLLNLPG 403


>EF032397-1|ABM97933.1|  200|Apis mellifera arginine kinase protein.
          Length = 200

 Score = 23.8 bits (49), Expect = 1.7
 Identities = 11/22 (50%), Positives = 12/22 (54%)
 Frame = +1

Query: 346 YLSSDEMSQLSTDDDSFDWNML 411
           YLS D   QL T   SFD  +L
Sbjct: 13  YLSKDVFDQLKTKKTSFDSTLL 34


>DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 510

 Score = 23.8 bits (49), Expect = 1.7
 Identities = 12/38 (31%), Positives = 15/38 (39%)
 Frame = +1

Query: 454 PVETNHFPHDANLXDRTHDSCKCNWYLSGFTACXTSTL 567
           P+E  +FP D         SCKC  Y+     C    L
Sbjct: 163 PMELRNFPMDRQSCPLILGSCKC-IYVQSINLCMAGRL 199


>AF023619-1|AAC39040.1|  355|Apis mellifera arginine kinase protein.
          Length = 355

 Score = 23.8 bits (49), Expect = 1.7
 Identities = 11/22 (50%), Positives = 12/22 (54%)
 Frame = +1

Query: 346 YLSSDEMSQLSTDDDSFDWNML 411
           YLS D   QL T   SFD  +L
Sbjct: 29  YLSKDVFDQLKTKKTSFDSTLL 50


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 161,802
Number of Sequences: 438
Number of extensions: 3189
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22657590
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)