Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP15_T7_H08
         (754 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC685.06 |rps001|rps0-1, rpsa-1, rps0|40S ribosomal protein S0...   127   1e-30
SPAPJ698.02c |rps002|rpsa-2, rps0-2, rps0|40S ribosomal protein ...   126   4e-30
SPAC24C9.10c |mrp4||mitochondrial ribosomal protein subunit S2|S...    32   0.076
SPCC1840.08c |||protein disulfide isomerase |Schizosaccharomyces...    26   5.0  
SPAC1952.06c |||DUF1716 family protein|Schizosaccharomyces pombe...    26   6.6  
SPAC19G12.14 |its3||1-phosphatidylinositol-4-phosphate 5-kinase ...    25   8.8  

>SPBC685.06 |rps001|rps0-1, rpsa-1, rps0|40S ribosomal protein S0A
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 292

 Score =  127 bits (307), Expect = 1e-30
 Identities = 72/130 (55%), Positives = 85/130 (65%), Gaps = 3/130 (2%)
 Frame = -1

Query: 712 FXAHTGXTXIAXRFHTRCFX*PDPSCIP*TFVX*---LYWDPAQDHQPITEASYVNIPVI 542
           F AHTG T IA RF    F     + I  T+      +  DP  D Q I EAS+VNIPVI
Sbjct: 92  FAAHTGATAIAGRFTPGNFT----NYITRTYREPRLIVVTDPRADAQAIKEASFVNIPVI 147

Query: 541 ALRNTDSPLRFVDIAIPCNTKSSHSIGLMWWLLAREVLRLRGVLPRDQRWDVVVDLFFYR 362
           AL +TDS L  VDIAIP N K   SIGL+W+LLAREVLR+RG L R   WDV+ DL+FYR
Sbjct: 148 ALCDTDSILNHVDIAIPTNNKGRKSIGLIWYLLAREVLRVRGTLSRSAPWDVMPDLYFYR 207

Query: 361 DPEESEKDEQ 332
           DPEE E++E+
Sbjct: 208 DPEEVEREEE 217



 Score = 25.4 bits (53), Expect = 8.8
 Identities = 10/17 (58%), Positives = 11/17 (64%)
 Frame = -2

Query: 672 FTPGVFXNQIQAAFREP 622
           FTPG F N I   +REP
Sbjct: 105 FTPGNFTNYITRTYREP 121


>SPAPJ698.02c |rps002|rpsa-2, rps0-2, rps0|40S ribosomal protein
           S0B|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 287

 Score =  126 bits (303), Expect = 4e-30
 Identities = 71/131 (54%), Positives = 85/131 (64%), Gaps = 3/131 (2%)
 Frame = -1

Query: 712 FXAHTGXTXIAXRFHTRCFX*PDPSCIP*TFVX*---LYWDPAQDHQPITEASYVNIPVI 542
           F AHTG T IA RF    F     + I  T+      +  DP  D Q I EAS+VNIPVI
Sbjct: 93  FAAHTGATAIAGRFTPGNFT----NYITRTYREPRLIIVTDPRADAQAIKEASFVNIPVI 148

Query: 541 ALRNTDSPLRFVDIAIPCNTKSSHSIGLMWWLLAREVLRLRGVLPRDQRWDVVVDLFFYR 362
           AL +TDS L  VD+AIP N K   SIGL W+LLAREVLRLRG + R   W+V+ DL+FYR
Sbjct: 149 ALCDTDSILNHVDVAIPINNKGYKSIGLAWYLLAREVLRLRGNISRTTAWEVMPDLYFYR 208

Query: 361 DPEESEKDEQQ 329
           DPEE E++E+Q
Sbjct: 209 DPEEIEREEEQ 219



 Score = 25.4 bits (53), Expect = 8.8
 Identities = 10/17 (58%), Positives = 11/17 (64%)
 Frame = -2

Query: 672 FTPGVFXNQIQAAFREP 622
           FTPG F N I   +REP
Sbjct: 106 FTPGNFTNYITRTYREP 122


>SPAC24C9.10c |mrp4||mitochondrial ribosomal protein subunit
           S2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 263

 Score = 32.3 bits (70), Expect = 0.076
 Identities = 17/55 (30%), Positives = 27/55 (49%)
 Frame = -1

Query: 601 DPAQDHQPITEASYVNIPVIALRNTDSPLRFVDIAIPCNTKSSHSIGLMWWLLAR 437
           +P ++     EA   ++P I + +TD+  R V   IP N  S     L+  LL+R
Sbjct: 187 NPLENKSACLEAQKTHVPTIGIIDTDADPRMVTYPIPANDDSLRCTDLIAGLLSR 241


>SPCC1840.08c |||protein disulfide isomerase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 561

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = -1

Query: 466 IGLMWWLLAREVLRLRGVLPRDQRWD 389
           IGL W L  REV R + +  R++ WD
Sbjct: 365 IGLKWTLKLREVERKQLLTAREKWWD 390


>SPAC1952.06c |||DUF1716 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 564

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 12/27 (44%), Positives = 17/27 (62%), Gaps = 2/27 (7%)
 Frame = -2

Query: 411 FPVTSAGML--WLICSSTVTLKKVKRM 337
           FP  S  ++  WL   +TVTLKK+K +
Sbjct: 480 FPFQSTVLILSWLCVENTVTLKKIKML 506


>SPAC19G12.14 |its3||1-phosphatidylinositol-4-phosphate 5-kinase
           Its3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 742

 Score = 25.4 bits (53), Expect = 8.8
 Identities = 13/44 (29%), Positives = 24/44 (54%)
 Frame = +1

Query: 328 LVVHPFHFLQGHGRRTNQPQHPSAGHGEAHHEASTLHVPTTTTS 459
           LV+ PF      G+R N+ Q  +AG+   +++  +L+  T  +S
Sbjct: 667 LVLKPFPLKPQDGQRVNKQQSVNAGNVRTNNKHGSLNNNTAPSS 710


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,781,712
Number of Sequences: 5004
Number of extensions: 53835
Number of successful extensions: 139
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 133
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 139
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 359287726
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)