Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP15_T7_H06
(931 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 32 0.10
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 31 0.18
SPAC57A7.04c |pabp||mRNA export shuttling protein |Schizosacchar... 30 0.40
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 29 0.71
SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M... 29 0.71
SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr... 29 0.71
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 28 1.6
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 27 2.8
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 26 6.6
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 32.3 bits (70), Expect = 0.10
Identities = 15/44 (34%), Positives = 15/44 (34%)
Frame = +1
Query: 799 PTPXPXXGPXPPXXGAGPXGPPPXXGGPXXXXTPPXXTXXXGGG 930
P P P P P G P PPP G PP GG
Sbjct: 746 PAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPPPAVSAGG 789
Score = 29.9 bits (64), Expect = 0.53
Identities = 15/36 (41%), Positives = 15/36 (41%), Gaps = 3/36 (8%)
Frame = +2
Query: 803 PPXPPXAXXPPXXGRAP---XAPPPXXGAPPXRXPP 901
PP PP A P AP P P G PP PP
Sbjct: 732 PPPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPP 767
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 31.5 bits (68), Expect = 0.18
Identities = 22/61 (36%), Positives = 22/61 (36%), Gaps = 3/61 (4%)
Frame = +2
Query: 728 PXAPPGRXPXRTXXGTXRAXGGXXQPPXPPXA-XXPPXXGRAPXAP--PPXXGAPPXRXP 898
P APP P G PP PP A PP P AP PP APP
Sbjct: 425 PSAPPSLPPSAP---PSLPMGAPAAPPLPPSAPIAPPLPAGMPAAPPLPPAAPAPPPAPA 481
Query: 899 P 901
P
Sbjct: 482 P 482
Score = 30.3 bits (65), Expect = 0.40
Identities = 18/64 (28%), Positives = 21/64 (32%), Gaps = 6/64 (9%)
Frame = +2
Query: 728 PXAPPGRXPXRTXXGTXRAXGGXXQPPXPPXAXX------PPXXGRAPXAPPPXXGAPPX 889
P P R + G + PP PP + PP AP PPP
Sbjct: 314 PPPPSRRNRGKPPIGNGSSNSSLPPPPPPPRSNAAGSIPLPPQGRSAPPPPPPRSAPSTG 373
Query: 890 RXPP 901
R PP
Sbjct: 374 RQPP 377
Score = 27.1 bits (57), Expect = 3.8
Identities = 18/57 (31%), Positives = 19/57 (33%), Gaps = 1/57 (1%)
Frame = +2
Query: 737 PPGRXPXRTXXGTXRAXGGXXQPPXPPXAXXPPXXGRAPXAP-PPXXGAPPXRXPPR 904
PP P R G G PP PP A P PP + P PPR
Sbjct: 312 PPPPPPSRRNRGKPPIGNGSSNSSLPPPPP-PPRSNAAGSIPLPPQGRSAPPPPPPR 367
>SPAC57A7.04c |pabp||mRNA export shuttling protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 653
Score = 30.3 bits (65), Expect = 0.40
Identities = 13/30 (43%), Positives = 13/30 (43%)
Frame = +1
Query: 793 GXPTPXPXXGPXPPXXGAGPXGPPPXXGGP 882
G PT P GP P G GP P G P
Sbjct: 515 GMPTQFPAGGPAPGYPGMNARGPVPAQGRP 544
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 29.5 bits (63), Expect = 0.71
Identities = 12/33 (36%), Positives = 13/33 (39%)
Frame = +2
Query: 803 PPXPPXAXXPPXXGRAPXAPPPXXGAPPXRXPP 901
PP P + PP PPP PP PP
Sbjct: 1690 PPVRPQSAAPPQMSAPTPPPPPMSVPPPPSAPP 1722
Score = 28.7 bits (61), Expect = 1.2
Identities = 14/33 (42%), Positives = 15/33 (45%)
Frame = +2
Query: 803 PPXPPXAXXPPXXGRAPXAPPPXXGAPPXRXPP 901
PP PP + PP P APP G P PP
Sbjct: 1707 PPPPPMSVPPP-----PSAPPMPAGPPSAPPPP 1734
Score = 27.1 bits (57), Expect = 3.8
Identities = 18/65 (27%), Positives = 18/65 (27%), Gaps = 4/65 (6%)
Frame = +2
Query: 728 PXAPPGRXPXRTXXGTXRAXGGXXQPPXP----PXAXXPPXXGRAPXAPPPXXGAPPXRX 895
P P P R PP P P PP P APPP A
Sbjct: 1683 PAHPVSTPPVRPQSAAPPQMSAPTPPPPPMSVPPPPSAPPMPAGPPSAPPPPLPASSAPS 1742
Query: 896 PPRXG 910
P G
Sbjct: 1743 VPNPG 1747
Score = 26.2 bits (55), Expect = 6.6
Identities = 12/35 (34%), Positives = 13/35 (37%)
Frame = +1
Query: 799 PTPXPXXGPXPPXXGAGPXGPPPXXGGPXXXXTPP 903
P P P P PP P GPP P + P
Sbjct: 1707 PPPPPMSVPPPPSAPPMPAGPPSAPPPPLPASSAP 1741
>SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr
1|||Manual
Length = 500
Score = 29.5 bits (63), Expect = 0.71
Identities = 12/26 (46%), Positives = 14/26 (53%)
Frame = -2
Query: 876 PXXGGGAXGARPXXGGXXAXGGXGGW 799
P GGG+ G R GG GG GG+
Sbjct: 443 PRTGGGSRGGRGGFGGRGGFGGRGGF 468
>SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 305
Score = 29.5 bits (63), Expect = 0.71
Identities = 17/35 (48%), Positives = 17/35 (48%), Gaps = 1/35 (2%)
Frame = -2
Query: 903 RGGXLXGGAPXXGGGAXGARPXXGG-XXAXGGXGG 802
RGG G GGG GAR GG A GG GG
Sbjct: 25 RGGFGGGRGGARGGGRGGARGGRGGRGGARGGRGG 59
Score = 28.3 bits (60), Expect = 1.6
Identities = 23/57 (40%), Positives = 24/57 (42%)
Frame = -2
Query: 903 RGGXLXGGAPXXGGGAXGARPXXGGXXAXGGXGGWXXPPXARXVPXXVRXGXRPGGA 733
RGG GG GGG GAR G A GG GG R R G + GGA
Sbjct: 18 RGG-FNGGRGGFGGGRGGAR-GGGRGGARGGRGGRGGARGGRGGSSGGRGGAK-GGA 71
>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 309
Score = 28.3 bits (60), Expect = 1.6
Identities = 14/36 (38%), Positives = 16/36 (44%), Gaps = 4/36 (11%)
Frame = +2
Query: 806 PXPPXAXXPPXXGRAP----XAPPPXXGAPPXRXPP 901
P P A PP +AP PPP A P + PP
Sbjct: 150 PPPSPASAPPIPSKAPPIPSSLPPPAQPAAPVKSPP 185
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 27.5 bits (58), Expect = 2.8
Identities = 28/113 (24%), Positives = 29/113 (25%), Gaps = 5/113 (4%)
Frame = +2
Query: 575 PPPXRXPXPPXXXLPRPXD-PPXPXXXXXXXXXXXXXXXXXXXXXXXXXXXXPXAPPGRX 751
PPP P +P P PP P P AP G
Sbjct: 1063 PPPVPAPSSEIPSIPAPSGAPPVPAPSGIPPVPKPSVAAPPVPKPSVAVPPVP-APSGAP 1121
Query: 752 PX---RTXXGTXRAXGGXXQPPXPPXAXXP-PXXGRAPXAPPPXXGAPPXRXP 898
P G P P A P P AP P P APP P
Sbjct: 1122 PVPKPSVAAPPVPVPSGAPPVPKPSVAAPPVPAPSGAPPVPKPSVAAPPVPAP 1174
Score = 27.5 bits (58), Expect = 2.8
Identities = 18/57 (31%), Positives = 21/57 (36%), Gaps = 2/57 (3%)
Frame = +2
Query: 734 APPGRXPXRTXXGTXRAXGGXXQPPXPPXAXXPPXXGRAPXAPP--PXXGAPPXRXP 898
APP P + G PP PP + PP + PP P APP P
Sbjct: 1168 APPVPAPSSGIPPVPKPAAGV--PPVPPPSEAPPVPKPSVGVPPVPPPSTAPPVPTP 1222
Score = 25.8 bits (54), Expect = 8.7
Identities = 13/35 (37%), Positives = 15/35 (42%), Gaps = 3/35 (8%)
Frame = +2
Query: 803 PPXPPXAXXPPXXGRAPXAPP---PXXGAPPXRXP 898
PP PP + PP + PP P APP P
Sbjct: 1208 PPVPPPSTAPPVPTPSAGLPPVPVPTAKAPPVPAP 1242
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 26.2 bits (55), Expect = 6.6
Identities = 12/27 (44%), Positives = 13/27 (48%)
Frame = +2
Query: 821 AXXPPXXGRAPXAPPPXXGAPPXRXPP 901
A PP G P PPP PP + PP
Sbjct: 2 ASLPP--GNPPPPPPPPGFEPPSQPPP 26
Score = 25.8 bits (54), Expect = 8.7
Identities = 11/26 (42%), Positives = 12/26 (46%)
Frame = +2
Query: 791 GXXQPPXPPXAXXPPXXGRAPXAPPP 868
G PP PP PP + P PPP
Sbjct: 7 GNPPPPPPPPGFEPP--SQPPPPPPP 30
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.310 0.138 0.461
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,614,974
Number of Sequences: 5004
Number of extensions: 17749
Number of successful extensions: 130
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 80
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 471335896
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.6 bits)
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