Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP15_T7_H05
         (798 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z46791-5|CAA86755.2|  948|Caenorhabditis elegans Hypothetical pr...    33   0.24 
AF016669-1|AAB66098.3| 1758|Caenorhabditis elegans Signal elemen...    29   2.9  

>Z46791-5|CAA86755.2|  948|Caenorhabditis elegans Hypothetical
           protein C09G5.6 protein.
          Length = 948

 Score = 33.1 bits (72), Expect = 0.24
 Identities = 22/85 (25%), Positives = 30/85 (35%)
 Frame = +3

Query: 492 SPXTPPXXKSLLGXLGSXKTXPGNVXIINXQTTGSNGPXAGXPLTTXQXKXPRQXRLXPG 671
           SP TPP  +   G     +T P +  I N +   ++GP             P Q R+ P 
Sbjct: 240 SPNTPPPRQPSGGYDSDGQTPPSSPRIYNTRRPNNHGPGYPEDQVPTAPPVPGQQRVPPT 299

Query: 672 LTKXHRLXKPPRXPXXTPPPXPGQH 746
            T+        R P    PP    H
Sbjct: 300 QTRNPPNPTNTRQPSRPVPPTSDGH 324


>AF016669-1|AAB66098.3| 1758|Caenorhabditis elegans Signal element
           on autosome protein2 protein.
          Length = 1758

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 14/34 (41%), Positives = 19/34 (55%), Gaps = 3/34 (8%)
 Frame = +2

Query: 545 QNXPRQCRHNQXPN---NGLXRPXRRXPXXNPPK 637
           QN P+Q +HNQ  N   N + +P  + P   PPK
Sbjct: 898 QNPPQQVQHNQHQNQMLNPIRQPLLQSPPPPPPK 931


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,315,740
Number of Sequences: 27780
Number of extensions: 212514
Number of successful extensions: 520
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 473
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 516
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1945792630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)