Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP15_T7_H04
         (904 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_0299 - 17051570-17052474,17053542-17053755                       38   0.014
06_01_0178 + 1386981-1387505                                           28   8.8  

>12_02_0299 - 17051570-17052474,17053542-17053755
          Length = 372

 Score = 37.5 bits (83), Expect = 0.014
 Identities = 33/116 (28%), Positives = 35/116 (30%), Gaps = 1/116 (0%)
 Frame = -1

Query: 751 PXFXLXPXPPPXXFXPXPFXXSXSPXXSPXXXXXXFSXPXXXXXPXFSFPXASLFXXFXX 572
           P   L P PPP    P P     +P  SP      F  P     P  +FP   L   F  
Sbjct: 228 PIPFLTPPPPPFLPFPLPPIPFLTPP-SPPPPAFPFPLPPWPWAPPPAFPFPHLPPIFSP 286

Query: 571 P-PPSXPXXXXXXXXXFXPPFXFFPXXXXXXXXFXXPXXXXXSXPXSXPPPSXLXP 407
           P PP  P           PP   FP           P       P   PPPS   P
Sbjct: 287 PSPPPPPPPAFPFPFPQLPPLPHFPPLPS-----FYPSPPPPPPPPPPPPPSFPWP 337



 Score = 29.9 bits (64), Expect = 2.9
 Identities = 24/85 (28%), Positives = 24/85 (28%), Gaps = 3/85 (3%)
 Frame = -1

Query: 745 FXLXPXP--PPXXFXPXPFXXSXSPXXSPXXXXXXFSXPXXXXXPXFSFPXASLFXXFXX 572
           F L P P  PP  F         SP   P      F  P     P   FP    F     
Sbjct: 262 FPLPPWPWAPPPAFPFPHLPPIFSPPSPPPPPPPAFPFPFPQLPPLPHFPPLPSFYPSPP 321

Query: 571 PPPSXPXXXXXXXXXFXPPF-XFFP 500
           PPP  P           PP    FP
Sbjct: 322 PPPPPPPPPPPSFPWPFPPLAPLFP 346


>06_01_0178 + 1386981-1387505
          Length = 174

 Score = 28.3 bits (60), Expect = 8.8
 Identities = 29/116 (25%), Positives = 29/116 (25%)
 Frame = +3

Query: 405 RGXXXEGGGXEXGXEXXXXKGXXKXXXXXXXXGKKXKGGXKXXXXXXXXXGXEGGGXXKX 584
           RG    GG    G       G           G   KGG           G  GGG  K 
Sbjct: 21  RGRGGRGGRGGRGGASGGGGGGGGGGGGGGGGGAGGKGGKGGAGGHGGAGGGGGGGGGKG 80

Query: 585 XKREAXGXEKXGXXXXXGXEXXXXXXXGXXKGEXXXXKGXGXXXXGGGXGXRXXXG 752
            K  A G    G     G         G   G      G G     GG G R   G
Sbjct: 81  RKGGAGGHGGAGGGGGGGGGKGRKGGRGGDGGSGGAG-GRGGDGGSGGQGGRGGDG 135


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.309    0.139    0.416 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,260,400
Number of Sequences: 37544
Number of extensions: 155355
Number of successful extensions: 377
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 281
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 372
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2553813320
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.6 bits)