Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP15_T7_H03
(824 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_01_0375 - 3307206-3307316,3307870-3307965,3308061-3308132,330... 33 0.36
02_05_0686 - 30900748-30902167,30903442-30904742 33 0.36
01_01_0070 - 542603-542686,542803-543441 32 0.48
03_02_0155 - 5974118-5974173,5974242-5974314,5974393-5974500,597... 29 3.4
11_01_0359 - 2731522-2732346 28 7.8
08_01_0003 + 30085-30195,30289-30365,31080-31136,31668-33560,336... 28 7.8
04_04_1578 + 34569091-34569966 28 7.8
03_01_0461 - 3543554-3543781,3544287-3544367,3544481-3544714,354... 28 7.8
>08_01_0375 -
3307206-3307316,3307870-3307965,3308061-3308132,
3308247-3308315,3308427-3308513,3308753-3308858,
3309118-3309237,3309327-3309406,3309497-3309878,
3310746-3310814,3311460-3312202
Length = 644
Score = 32.7 bits (71), Expect = 0.36
Identities = 17/59 (28%), Positives = 18/59 (30%)
Frame = +1
Query: 613 PATXPDPXAPPXKXNXXXGPPPXRXXGTXAXQXXTPXGXPPXGPHXXPPTXXXPXKQSP 789
P PP PPP G + Q P PP P PP P Q P
Sbjct: 74 PGPPQQQQPPPPPQMYYQPPPPPPPYGVNSSQPPPPPPPPPSPPPSAPPPPPPPPTQPP 132
>02_05_0686 - 30900748-30902167,30903442-30904742
Length = 906
Score = 32.7 bits (71), Expect = 0.36
Identities = 20/63 (31%), Positives = 21/63 (33%)
Frame = +1
Query: 616 ATXPDPXAPPXKXNXXXGPPPXRXXGTXAXQXXTPXGXPPXGPHXXPPTXXXPXKQSPXQ 795
A+ P PP K PPP A P G PP P PP P SP
Sbjct: 309 ASPAPPPPPPPKPAAAAPPPPPPPKA--APPPPPPKGPPPPPPAKGPPPPPPPKGPSPPP 366
Query: 796 XXP 804
P
Sbjct: 367 PPP 369
Score = 31.9 bits (69), Expect = 0.64
Identities = 19/64 (29%), Positives = 20/64 (31%)
Frame = +1
Query: 613 PATXPDPXAPPXKXNXXXGPPPXRXXGTXAXQXXTPXGXPPXGPHXXPPTXXXPXKQSPX 792
PA P PP K PPP + P PP GP PP K P
Sbjct: 321 PAAAAPPPPPPPKAAPP--PPPPKGPPPPPPAKGPPPPPPPKGPSPPPPPPPGGKKGGPP 378
Query: 793 QXXP 804
P
Sbjct: 379 PPPP 382
>01_01_0070 - 542603-542686,542803-543441
Length = 240
Score = 32.3 bits (70), Expect = 0.48
Identities = 17/65 (26%), Positives = 20/65 (30%), Gaps = 1/65 (1%)
Frame = +1
Query: 613 PATXPDPXAPPXKXNXXXGPPPXRXXGTXAXQXXTPXGXPPXGPHXXPP-TXXXPXKQSP 789
P P P PP PPP P P P PP T P ++P
Sbjct: 93 PPVTPPPVTPPPVTPPPVSPPPATPPPALPPSTPPPVAAPAEAPAALPPATTPPPVAEAP 152
Query: 790 XQXXP 804
+ P
Sbjct: 153 AELPP 157
>03_02_0155 -
5974118-5974173,5974242-5974314,5974393-5974500,
5975189-5976914,5977065-5977620,5978008-5978485
Length = 998
Score = 29.5 bits (63), Expect = 3.4
Identities = 13/40 (32%), Positives = 14/40 (35%)
Frame = +1
Query: 670 PPPXRXXGTXAXQXXTPXGXPPXGPHXXPPTXXXPXKQSP 789
PPP R P PP P PP+ P SP
Sbjct: 71 PPPPRPPSFAPENALPPSSPPPPSPPPPPPSSPPPVPPSP 110
>11_01_0359 - 2731522-2732346
Length = 274
Score = 28.3 bits (60), Expect = 7.8
Identities = 18/52 (34%), Positives = 18/52 (34%), Gaps = 3/52 (5%)
Frame = +1
Query: 613 PATXPDPXAPPXKXNXXXG---PPPXRXXGTXAXQXXTPXGXPPXGPHXXPP 759
PA P P PP PPP GT A P PP H PP
Sbjct: 4 PANHPPP--PPSSNAAYFASAAPPPAATNGTAAFAVAYPYPAPPPHSHSHPP 53
>08_01_0003 + 30085-30195,30289-30365,31080-31136,31668-33560,
33643-34147,34250-34358,34436-34548,34619-34806,
35481-36129,36169-36691,36760-36911,37042-37141,
37301-37416
Length = 1530
Score = 28.3 bits (60), Expect = 7.8
Identities = 18/60 (30%), Positives = 19/60 (31%)
Frame = +1
Query: 625 PDPXAPPXKXNXXXGPPPXRXXGTXAXQXXTPXGXPPXGPHXXPPTXXXPXKQSPXQXXP 804
P P PP PPP G +P PP P P T P SP P
Sbjct: 1124 PLPDGPPPLP-LDAPPPPPLPEGPPPLPSDSPPCQPPLPPSPPPATPPPPPPLSPSLPPP 1182
>04_04_1578 + 34569091-34569966
Length = 291
Score = 28.3 bits (60), Expect = 7.8
Identities = 12/24 (50%), Positives = 13/24 (54%)
Frame = +1
Query: 613 PATXPDPXAPPXKXNXXXGPPPXR 684
PAT P APP + GPPP R
Sbjct: 239 PATAPAMAAPPAQKAPPAGPPPPR 262
>03_01_0461 -
3543554-3543781,3544287-3544367,3544481-3544714,
3545335-3545415,3545456-3545538,3546445-3546604,
3546903-3547028
Length = 330
Score = 28.3 bits (60), Expect = 7.8
Identities = 13/40 (32%), Positives = 18/40 (45%)
Frame = -3
Query: 147 DEWSTTXXXXXXAIRSALVGWIRSRLECCINTLHWLIILH 28
DEW+ IRS LVG + CC+ + +LH
Sbjct: 287 DEWAVAVGEATKTIRSTLVGCASPVVGCCMKNKNCGCVLH 326
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,086,399
Number of Sequences: 37544
Number of extensions: 238314
Number of successful extensions: 755
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 543
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 705
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2268190812
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -