Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP15_T7_H01
(789 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF000298-11|AAM97960.1| 518|Caenorhabditis elegans Prion-like-(... 33 0.23
AF000298-10|AAM97961.1| 539|Caenorhabditis elegans Prion-like-(... 33 0.23
AF000298-8|AAC48255.2| 524|Caenorhabditis elegans Prion-like-(q... 33 0.23
Z79694-1|CAB01959.1| 303|Caenorhabditis elegans Hypothetical pr... 33 0.31
M80650-1|AAA27985.1| 298|Caenorhabditis elegans alpha-collagen ... 32 0.41
AF039052-9|AAF98625.1| 302|Caenorhabditis elegans Hypothetical ... 31 0.71
Z70208-2|CAA94136.1| 304|Caenorhabditis elegans Hypothetical pr... 31 0.94
U41538-2|AAG00010.1| 997|Caenorhabditis elegans Hypothetical pr... 31 0.94
U14635-8|AAK84492.1| 307|Caenorhabditis elegans Collagen protei... 31 0.94
L15418-1|AAA17445.1| 307|Caenorhabditis elegans col-36 collagen... 31 0.94
Z74472-4|CAA98942.1| 301|Caenorhabditis elegans Hypothetical pr... 31 1.2
V00147-1|CAA23463.1| 296|Caenorhabditis elegans protein ( Caeno... 31 1.2
U41543-12|AAZ91345.1| 401|Caenorhabditis elegans Groundhog (hed... 31 1.2
J01047-1|AAA27988.1| 296|Caenorhabditis elegans protein ( C.ele... 31 1.2
AF067616-11|AAC19194.2| 627|Caenorhabditis elegans Collagen pro... 31 1.2
Z81124-1|CAB03369.1| 312|Caenorhabditis elegans Hypothetical pr... 30 1.6
U41557-2|AAA83301.1| 309|Caenorhabditis elegans Hypothetical pr... 30 1.6
AF000198-7|AAB53052.1| 418|Caenorhabditis elegans Collagen prot... 30 2.2
Z67990-1|CAA91932.1| 316|Caenorhabditis elegans Hypothetical pr... 29 2.9
Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical pr... 29 3.8
U58736-1|AAB00598.1| 302|Caenorhabditis elegans Dumpy : shorter... 29 3.8
U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA bi... 29 3.8
Z99773-3|CAE11316.1| 305|Caenorhabditis elegans Hypothetical pr... 29 5.0
Z77662-5|CAB01192.2| 579|Caenorhabditis elegans Hypothetical pr... 29 5.0
U61948-2|AAB03143.2| 345|Caenorhabditis elegans Collagen protei... 28 6.6
U53333-6|AAA96159.2| 304|Caenorhabditis elegans Collagen protei... 28 6.6
U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def... 28 6.6
U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def... 28 6.6
M25480-1|AAA27986.1| 326|Caenorhabditis elegans collagen protein. 28 6.6
AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein. 28 6.6
AF003386-9|AAB54259.1| 1621|Caenorhabditis elegans Hypothetical ... 25 6.7
AF025467-4|AAN65300.1| 1130|Caenorhabditis elegans Hypothetical ... 28 8.8
>AF000298-11|AAM97960.1| 518|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform b protein.
Length = 518
Score = 33.1 bits (72), Expect = 0.23
Identities = 40/164 (24%), Positives = 46/164 (28%), Gaps = 4/164 (2%)
Frame = +2
Query: 293 KRTXRPAGXAXPXTGXENXAPEXAKXPRATPGXPXGPXA-GKXXTARDXXNGPXXXPPPX 469
KR PAG P P P A G P P A G R P P
Sbjct: 228 KRQAPPAGSPPPPP------PPKGSPPLAGSGSPPPPPAAGSPPPPRTGSPPPPPTGSPP 281
Query: 470 PPPXXXXXGPPXXXXXXXXXXXXXXXQDHHTRTXXPXXP--ARPPXXQNXTPTPXXXXRX 643
PPP PP T + P + PP P P R
Sbjct: 282 PPPAGGSPPPPRAGSPPPPPPPRGSPP---TGSLPPPQAGGSPPPAGTGSPPPPPRQKRQ 338
Query: 644 XPXPATGTKXAP-XNPPRXXXPREXPAXXXXXAAXKPXSPRRHP 772
P + T P +PP PR P ++ PR P
Sbjct: 339 APERSPPTGSPPTGSPPTGRPPRGGPGKSSEESSESREGPRGGP 382
Score = 29.9 bits (64), Expect = 2.2
Identities = 18/67 (26%), Positives = 21/67 (31%)
Frame = +1
Query: 580 RTRPPPXXPKXDANPPXXXXXXPXPRNRXQXXPXXPXXKXXPPRXARPXXXXSSXQAXLP 759
RT PP P PP P P R P P + PP + P
Sbjct: 268 RTGSPPPPPTGSPPPPPAGGSPPPP--RAGSPPPPPPPRGSPPTGSLPPPQAGGSPPPAG 325
Query: 760 QETPPXP 780
+PP P
Sbjct: 326 TGSPPPP 332
>AF000298-10|AAM97961.1| 539|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform c protein.
Length = 539
Score = 33.1 bits (72), Expect = 0.23
Identities = 40/164 (24%), Positives = 46/164 (28%), Gaps = 4/164 (2%)
Frame = +2
Query: 293 KRTXRPAGXAXPXTGXENXAPEXAKXPRATPGXPXGPXA-GKXXTARDXXNGPXXXPPPX 469
KR PAG P P P A G P P A G R P P
Sbjct: 249 KRQAPPAGSPPPPP------PPKGSPPLAGSGSPPPPPAAGSPPPPRTGSPPPPPTGSPP 302
Query: 470 PPPXXXXXGPPXXXXXXXXXXXXXXXQDHHTRTXXPXXP--ARPPXXQNXTPTPXXXXRX 643
PPP PP T + P + PP P P R
Sbjct: 303 PPPAGGSPPPPRAGSPPPPPPPRGSPP---TGSLPPPQAGGSPPPAGTGSPPPPPRQKRQ 359
Query: 644 XPXPATGTKXAP-XNPPRXXXPREXPAXXXXXAAXKPXSPRRHP 772
P + T P +PP PR P ++ PR P
Sbjct: 360 APERSPPTGSPPTGSPPTGRPPRGGPGKSSEESSESREGPRGGP 403
Score = 29.9 bits (64), Expect = 2.2
Identities = 18/67 (26%), Positives = 21/67 (31%)
Frame = +1
Query: 580 RTRPPPXXPKXDANPPXXXXXXPXPRNRXQXXPXXPXXKXXPPRXARPXXXXSSXQAXLP 759
RT PP P PP P P R P P + PP + P
Sbjct: 289 RTGSPPPPPTGSPPPPPAGGSPPPP--RAGSPPPPPPPRGSPPTGSLPPPQAGGSPPPAG 346
Query: 760 QETPPXP 780
+PP P
Sbjct: 347 TGSPPPP 353
>AF000298-8|AAC48255.2| 524|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform a protein.
Length = 524
Score = 33.1 bits (72), Expect = 0.23
Identities = 40/164 (24%), Positives = 46/164 (28%), Gaps = 4/164 (2%)
Frame = +2
Query: 293 KRTXRPAGXAXPXTGXENXAPEXAKXPRATPGXPXGPXA-GKXXTARDXXNGPXXXPPPX 469
KR PAG P P P A G P P A G R P P
Sbjct: 234 KRQAPPAGSPPPPP------PPKGSPPLAGSGSPPPPPAAGSPPPPRTGSPPPPPTGSPP 287
Query: 470 PPPXXXXXGPPXXXXXXXXXXXXXXXQDHHTRTXXPXXP--ARPPXXQNXTPTPXXXXRX 643
PPP PP T + P + PP P P R
Sbjct: 288 PPPAGGSPPPPRAGSPPPPPPPRGSPP---TGSLPPPQAGGSPPPAGTGSPPPPPRQKRQ 344
Query: 644 XPXPATGTKXAP-XNPPRXXXPREXPAXXXXXAAXKPXSPRRHP 772
P + T P +PP PR P ++ PR P
Sbjct: 345 APERSPPTGSPPTGSPPTGRPPRGGPGKSSEESSESREGPRGGP 388
Score = 29.9 bits (64), Expect = 2.2
Identities = 18/67 (26%), Positives = 21/67 (31%)
Frame = +1
Query: 580 RTRPPPXXPKXDANPPXXXXXXPXPRNRXQXXPXXPXXKXXPPRXARPXXXXSSXQAXLP 759
RT PP P PP P P R P P + PP + P
Sbjct: 274 RTGSPPPPPTGSPPPPPAGGSPPPP--RAGSPPPPPPPRGSPPTGSLPPPQAGGSPPPAG 331
Query: 760 QETPPXP 780
+PP P
Sbjct: 332 TGSPPPP 338
>Z79694-1|CAB01959.1| 303|Caenorhabditis elegans Hypothetical
protein C15A11.1 protein.
Length = 303
Score = 32.7 bits (71), Expect = 0.31
Identities = 24/79 (30%), Positives = 27/79 (34%), Gaps = 1/79 (1%)
Frame = +2
Query: 269 GP-GAPXPXKRTXRPAGXAXPXTGXENXAPEXAKXPRATPGXPXGPXAGKXXTARDXXNG 445
GP G P P + P P E A P P GP AG+ A + G
Sbjct: 151 GPAGPPGPDGQPGAPGPNGQPGAAGTTSTNEPGSPGPAGPPGPAGP-AGEDAAAPESPPG 209
Query: 446 PXXXPPPXPPPXXXXXGPP 502
P PP PP G P
Sbjct: 210 PPG--PPGPPGKDGEAGAP 226
>M80650-1|AAA27985.1| 298|Caenorhabditis elegans alpha-collagen
protein.
Length = 298
Score = 32.3 bits (70), Expect = 0.41
Identities = 21/78 (26%), Positives = 29/78 (37%), Gaps = 1/78 (1%)
Frame = +2
Query: 272 PGAPXPXKRTXRPAGXAXPXTGXENXAPEXAKXPRATPGXPXGPXAGKXXTARDXXNGPX 451
PG P P + P P ++ AP P+ G P P A + +++ G
Sbjct: 156 PGPPGPPGDSGEPGSPGLPG---QDAAP-GEPGPKGPKGPPGAPGAPEHQESQECPRGEP 211
Query: 452 XXP-PPXPPPXXXXXGPP 502
P P PP GPP
Sbjct: 212 LIPGEPGPPGEAGPQGPP 229
>AF039052-9|AAF98625.1| 302|Caenorhabditis elegans Hypothetical
protein T22D1.2 protein.
Length = 302
Score = 31.5 bits (68), Expect = 0.71
Identities = 37/171 (21%), Positives = 45/171 (26%)
Frame = +2
Query: 269 GPGAPXPXKRTXRPAGXAXPXTGXENXAPEXAKXPRATPGXPXGPXAGKXXTARDXXNGP 448
G G P P P G + E A P G P P G+ N
Sbjct: 70 GTGTPPPP-----PTGEPQDLSAEEGNASRRPPPPPKGTGTPPPPPTGEPQDLSGEGNA- 123
Query: 449 XXXPPPXPPPXXXXXGPPXXXXXXXXXXXXXXXQDHHTRTXXPXXPARPPXXQNXTPTPX 628
PPP P PP + P P T
Sbjct: 124 SRRPPPPPKGTGSPPPPPTGEPQDLSGEGNASRRPPPPPKGTGSPPPPPTGEPQDLSTEG 183
Query: 629 XXXRXXPXPATGTKXAPXNPPRXXXPREXPAXXXXXAAXKPXSPRRHPXXP 781
R P P GT P PP P++ A A+ +P P + P
Sbjct: 184 NASRRPPPPPKGTGTPP--PPPTGEPQDLSA--EGYASRRPPPPPKGTGSP 230
Score = 29.5 bits (63), Expect = 2.9
Identities = 35/171 (20%), Positives = 45/171 (26%)
Frame = +2
Query: 269 GPGAPXPXKRTXRPAGXAXPXTGXENXAPEXAKXPRATPGXPXGPXAGKXXTARDXXNGP 448
G G P P P G +G N + P+ T G P P G+
Sbjct: 39 GTGTPPPP-----PTGEPQDLSGEGNASRRPPPPPKGT-GTPPPPPTGEPQDLSAEEGNA 92
Query: 449 XXXPPPXPPPXXXXXGPPXXXXXXXXXXXXXXXQDHHTRTXXPXXPARPPXXQNXTPTPX 628
PPP P PP + P P
Sbjct: 93 SRRPPPPPKGTGTPPPPPTGEPQDLSGEGNASRRPPPPPKGTGSPPPPPTGEPQDLSGEG 152
Query: 629 XXXRXXPXPATGTKXAPXNPPRXXXPREXPAXXXXXAAXKPXSPRRHPXXP 781
R P P GT P PP P++ A+ +P P + P
Sbjct: 153 NASRRPPPPPKGTGSPP--PPPTGEPQDLST--EGNASRRPPPPPKGTGTP 199
>Z70208-2|CAA94136.1| 304|Caenorhabditis elegans Hypothetical
protein F54B11.2 protein.
Length = 304
Score = 31.1 bits (67), Expect = 0.94
Identities = 23/81 (28%), Positives = 24/81 (29%), Gaps = 5/81 (6%)
Frame = +2
Query: 272 PGAPXPXKRTXRPAGXAXPXTGX----ENXAPEXAKXPRATPGXPXGPXAGKXXTARDXX 439
PG P + P P G E P K A P P GP D
Sbjct: 117 PGKPGKPGKPGAPGNPGAPGKGAAVPCEAKTPPPCKPCPAGPPGPPGPDGPAGPAGPDGE 176
Query: 440 NG-PXXXPPPXPPPXXXXXGP 499
G P PP PP GP
Sbjct: 177 AGSPAAPSPPGPPGPSGPAGP 197
Score = 29.1 bits (62), Expect = 3.8
Identities = 26/77 (33%), Positives = 26/77 (33%)
Frame = +2
Query: 269 GPGAPXPXKRTXRPAGXAXPXTGXENXAPEXAKXPRATPGXPXGPXAGKXXTARDXXNGP 448
GP T P G A T E AP A P P P GP G TA P
Sbjct: 196 GPAGNDGAAGTPGPDGPAGESTYPEPAAPGPAGPPG--PAGPPGPD-GASPTA-----AP 247
Query: 449 XXXPPPXPPPXXXXXGP 499
PP PP GP
Sbjct: 248 GAAGPPGPPGPAGAPGP 264
>U41538-2|AAG00010.1| 997|Caenorhabditis elegans Hypothetical
protein R04E5.8a protein.
Length = 997
Score = 31.1 bits (67), Expect = 0.94
Identities = 28/110 (25%), Positives = 30/110 (27%), Gaps = 2/110 (1%)
Frame = +2
Query: 371 PRATPGXPXGPXAGKXXTARDXXNGPXXXPPPXPPPXXXXXG--PPXXXXXXXXXXXXXX 544
P A PG P G A + PPP PP G PP
Sbjct: 94 PYAYPGYPVPGQEGHQVPAPQHGDHEASPPPPPPPRKSRAGGSSPPPPPPPRVPRTPPPR 153
Query: 545 XQDHHTRTXXPXXPARPPXXQNXTPTPXXXXRXXPXPATGTKXAPXNPPR 694
P P R P +P P R P P P PPR
Sbjct: 154 SPPPRRPPMTPPSPQRRPPRTPPSPEPRNPPRTPPSP------IPPPPPR 197
Score = 29.5 bits (63), Expect = 2.9
Identities = 18/68 (26%), Positives = 21/68 (30%), Gaps = 1/68 (1%)
Frame = +1
Query: 589 PPPXXPKXDANPPXXXXXXPXPRNRXQXXPXXPXXKXXPPRXAR-PXXXXSSXQAXLPQE 765
PPP + + P PR P PP R P S + P
Sbjct: 126 PPPRKSRAGGSSPPPPPPPRVPRTPPPRSPPPRRPPMTPPSPQRRPPRTPPSPEPRNPPR 185
Query: 766 TPPXPXXP 789
TPP P P
Sbjct: 186 TPPSPIPP 193
>U14635-8|AAK84492.1| 307|Caenorhabditis elegans Collagen protein
36 protein.
Length = 307
Score = 31.1 bits (67), Expect = 0.94
Identities = 16/41 (39%), Positives = 16/41 (39%), Gaps = 1/41 (2%)
Frame = +2
Query: 383 PGXPXGPXAGKXXTARDXXNG-PXXXPPPXPPPXXXXXGPP 502
P P GP A D NG P PP PP GPP
Sbjct: 177 PKGPPGPKGKSQERAADGKNGEPGMIGPPGPPGGVGEPGPP 217
>L15418-1|AAA17445.1| 307|Caenorhabditis elegans col-36 collagen
protein.
Length = 307
Score = 31.1 bits (67), Expect = 0.94
Identities = 16/41 (39%), Positives = 16/41 (39%), Gaps = 1/41 (2%)
Frame = +2
Query: 383 PGXPXGPXAGKXXTARDXXNG-PXXXPPPXPPPXXXXXGPP 502
P P GP A D NG P PP PP GPP
Sbjct: 177 PKGPPGPKGKSQERAADGKNGEPGMIGPPGPPGGVGEPGPP 217
>Z74472-4|CAA98942.1| 301|Caenorhabditis elegans Hypothetical
protein F23H12.4 protein.
Length = 301
Score = 30.7 bits (66), Expect = 1.2
Identities = 23/77 (29%), Positives = 27/77 (35%), Gaps = 1/77 (1%)
Frame = +2
Query: 272 PGAPXPXKRTXRPAGXAX-PXTGXENXAPEXAKXPRATPGXPXGPXAGKXXTARDXXNGP 448
PG+P P + PAG A P E P ++ TPG P P P
Sbjct: 182 PGSPGP-RGPPGPAGEAGAPGPAGEPGTPAISEP--LTPGAPGEPGDSGPPGPPGPPGAP 238
Query: 449 XXXPPPXPPPXXXXXGP 499
PP PP GP
Sbjct: 239 GNDGPPGPPGPKGAPGP 255
>V00147-1|CAA23463.1| 296|Caenorhabditis elegans protein (
Caenorhabditis elegansgene Col-1 coding for a collagen.
).
Length = 296
Score = 30.7 bits (66), Expect = 1.2
Identities = 23/77 (29%), Positives = 27/77 (35%), Gaps = 1/77 (1%)
Frame = +2
Query: 272 PGAPXPXKRTXRPAGXAX-PXTGXENXAPEXAKXPRATPGXPXGPXAGKXXTARDXXNGP 448
PG+P P + PAG A P E P ++ TPG P P P
Sbjct: 177 PGSPGP-RGPPGPAGEAGAPGPAGEPGTPAISEP--LTPGAPGEPGDSGPPGPPGPPGAP 233
Query: 449 XXXPPPXPPPXXXXXGP 499
PP PP GP
Sbjct: 234 GNDGPPGPPGPKGAPGP 250
Score = 28.7 bits (61), Expect = 5.0
Identities = 21/69 (30%), Positives = 24/69 (34%)
Frame = +2
Query: 272 PGAPXPXKRTXRPAGXAXPXTGXENXAPEXAKXPRATPGXPXGPXAGKXXTARDXXNGPX 451
PGAP + P G P N P P+ PG P GP D +GP
Sbjct: 212 PGAPGEPGDSG-PPGPPGPPGAPGNDGPPGPPGPKGAPG-PDGPPGA------DGQSGPP 263
Query: 452 XXPPPXPPP 478
P P P
Sbjct: 264 GPPGPAGTP 272
>U41543-12|AAZ91345.1| 401|Caenorhabditis elegans Groundhog
(hedgehog-like family)protein 7 protein.
Length = 401
Score = 30.7 bits (66), Expect = 1.2
Identities = 23/79 (29%), Positives = 25/79 (31%), Gaps = 2/79 (2%)
Frame = +2
Query: 272 PGAPXPXKRTXRPAGX--AXPXTGXENXAPEXAKXPRATPGXPXGPXAGKXXTARDXXNG 445
P AP P PA + P AP A P+ P P A A
Sbjct: 68 PPAPYPQHAVPAPAPPLASYPQNAVPVPAPPPAPYPQHAVPAPAPPPAPYPQHAVPAPAP 127
Query: 446 PXXXPPPXPPPXXXXXGPP 502
PPP PPP PP
Sbjct: 128 YQQQPPPPPPPPHYPPPPP 146
>J01047-1|AAA27988.1| 296|Caenorhabditis elegans protein (
C.elegans (nematode)collagen 1 (col-1) gene, complete
cds. ).
Length = 296
Score = 30.7 bits (66), Expect = 1.2
Identities = 23/77 (29%), Positives = 27/77 (35%), Gaps = 1/77 (1%)
Frame = +2
Query: 272 PGAPXPXKRTXRPAGXAX-PXTGXENXAPEXAKXPRATPGXPXGPXAGKXXTARDXXNGP 448
PG+P P + PAG A P E P ++ TPG P P P
Sbjct: 177 PGSPGP-RGPPGPAGEAGAPGPAGEPGTPAISEP--LTPGAPGEPGDSGPPGPPGPPGAP 233
Query: 449 XXXPPPXPPPXXXXXGP 499
PP PP GP
Sbjct: 234 GNDGPPGPPGPKGAPGP 250
Score = 28.7 bits (61), Expect = 5.0
Identities = 21/69 (30%), Positives = 24/69 (34%)
Frame = +2
Query: 272 PGAPXPXKRTXRPAGXAXPXTGXENXAPEXAKXPRATPGXPXGPXAGKXXTARDXXNGPX 451
PGAP + P G P N P P+ PG P GP D +GP
Sbjct: 212 PGAPGEPGDSG-PPGPPGPPGAPGNDGPPGPPGPKGAPG-PDGPPGA------DGQSGPP 263
Query: 452 XXPPPXPPP 478
P P P
Sbjct: 264 GPPGPAGTP 272
>AF067616-11|AAC19194.2| 627|Caenorhabditis elegans Collagen
protein 99 protein.
Length = 627
Score = 30.7 bits (66), Expect = 1.2
Identities = 20/78 (25%), Positives = 26/78 (33%)
Frame = +2
Query: 269 GPGAPXPXKRTXRPAGXAXPXTGXENXAPEXAKXPRATPGXPXGPXAGKXXTARDXXNGP 448
GP P P+G P + + PG P P AG+ ++ GP
Sbjct: 422 GPPGPRGHHGPVGPSGERGPQGLPGHSGERGDRGDIGPPGLPGQPGAGEISGSQSGPRGP 481
Query: 449 XXXPPPXPPPXXXXXGPP 502
P PP GPP
Sbjct: 482 PGL--PGPPGEKGDLGPP 497
>Z81124-1|CAB03369.1| 312|Caenorhabditis elegans Hypothetical
protein T21B4.2 protein.
Length = 312
Score = 30.3 bits (65), Expect = 1.6
Identities = 22/70 (31%), Positives = 23/70 (32%), Gaps = 1/70 (1%)
Frame = +2
Query: 272 PGAPX-PXKRTXRPAGXAXPXTGXENXAPEXAKXPRATPGXPXGPXAGKXXTARDXXNGP 448
PGAP P P+G A G P PG P P A T GP
Sbjct: 183 PGAPGGPGAPGNTPSGGAAGPPGPPG--PPGGPGNDGQPGGPGNPGAPGAVTEVPGQQGP 240
Query: 449 XXXPPPXPPP 478
P P PP
Sbjct: 241 PGPPGPAGPP 250
>U41557-2|AAA83301.1| 309|Caenorhabditis elegans Hypothetical
protein C50F7.5 protein.
Length = 309
Score = 30.3 bits (65), Expect = 1.6
Identities = 20/82 (24%), Positives = 29/82 (35%), Gaps = 4/82 (4%)
Frame = +2
Query: 269 GPGAPXPXKRTXRPAGXAXPXTGXENXA--PEXAKXPRATPGXPXGPXAGKXXTARDXXN 442
G +P P + P+ P G + + P+ ++ P P P +
Sbjct: 191 GSSSPGPVDPSDEPSPSGPPSPGPVDPSEDPKPSEPPSPGPVDPSDEPSPSDPPGPPGPP 250
Query: 443 GPXXXPPPXP--PPXXXXXGPP 502
GP PP P PP GPP
Sbjct: 251 GPPTRRPPGPPGPPTRRPPGPP 272
Score = 28.7 bits (61), Expect = 5.0
Identities = 46/250 (18%), Positives = 72/250 (28%), Gaps = 4/250 (1%)
Frame = +2
Query: 44 HKQXQXXSAKNTXTQAGRATRXNLSIIXSSXXXXXIXGVXKSQTPAXQTHXSLILRKTSK 223
HK +++ T T +L I SS + S P T S++ + +++
Sbjct: 34 HKTKAPRTSRGIATTTFAPTSSDLPIAGSSSAPV----IASSADPILPT--SVVPQPSNE 87
Query: 224 TCXXXAEXXEKRXXIGPGAPXPXKRTX--RPAGXAXPXTGXENXAPEXAKXPRATPGXPX 397
++ GP +P P + +P+G P + P+ + P
Sbjct: 88 PSPGTVAPSDEPSPSGPPSPGPVNPSEDPQPSGPPSPGPVDPSEDPQPSVEPSEDHQPSG 147
Query: 398 GPXAGKXXTARDXXNG--PXXXPPPXPPPXXXXXGPPXXXXXXXXXXXXXXXQDHHTRTX 571
P G + D P P P PP P
Sbjct: 148 PPSPGPVDPSEDPQPSVEPSEDPQPSGPPSPGPVDPSEDPQPSGSSSPGPVDPSDEPSPS 207
Query: 572 XPXXPARPPXXQNXTPTPXXXXRXXPXPATGTKXAPXNPPRXXXPREXPAXXXXXAAXKP 751
P P P + P P P + + +P +PP P P P
Sbjct: 208 GPPSPG--PVDPSEDPKPSEPPSPGPVDPSD-EPSPSDPPGPPGP---PGPPTRRPPGPP 261
Query: 752 XSPRRHPXXP 781
P R P P
Sbjct: 262 GPPTRRPPGP 271
>AF000198-7|AAB53052.1| 418|Caenorhabditis elegans Collagen protein
50 protein.
Length = 418
Score = 29.9 bits (64), Expect = 2.2
Identities = 23/78 (29%), Positives = 27/78 (34%), Gaps = 1/78 (1%)
Frame = +2
Query: 269 GP-GAPXPXKRTXRPAGXAXPXTGXENXAPEXAKXPRATPGXPXGPXAGKXXTARDXXNG 445
GP G P P + P P G + A P P GP AG+ A+ G
Sbjct: 204 GPAGPPGPDGQPGAPGPDGQPGAGGTTSTNQPGPPGPAGPPGPAGP-AGEDAYAQPSPAG 262
Query: 446 PXXXPPPXPPPXXXXXGP 499
PP PP GP
Sbjct: 263 TPG--PPGPPGKDGEAGP 278
Score = 27.9 bits (59), Expect = 8.8
Identities = 20/77 (25%), Positives = 21/77 (27%)
Frame = +2
Query: 269 GPGAPXPXKRTXRPAGXAXPXTGXENXAPEXAKXPRATPGXPXGPXAGKXXTARDXXNGP 448
GP P PAG A P A P PG P G + G
Sbjct: 171 GPPGPDGNAGPAGPAGAAGPDGEGAGYAEPGPAGPAGPPG-PDGQPGAPGPDGQPGAGGT 229
Query: 449 XXXPPPXPPPXXXXXGP 499
P PP GP
Sbjct: 230 TSTNQPGPPGPAGPPGP 246
>Z67990-1|CAA91932.1| 316|Caenorhabditis elegans Hypothetical
protein F02D10.1 protein.
Length = 316
Score = 29.5 bits (63), Expect = 2.9
Identities = 20/78 (25%), Positives = 23/78 (29%), Gaps = 1/78 (1%)
Frame = +2
Query: 272 PGAPXPXKRTXRPAGXAXPXT-GXENXAPEXAKXPRATPGXPXGPXAGKXXTARDXXNGP 448
PG P +P P G + E P PG P GP + GP
Sbjct: 203 PGPAGPPGNDGQPGQPGGPGQDGASSAGGEAGPGPAGPPG-PAGPAGPDGQSGSGSAGGP 261
Query: 449 XXXPPPXPPPXXXXXGPP 502
PP P G P
Sbjct: 262 GPKGPPGPAGQPGSDGNP 279
>Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical
protein C08B11.5 protein.
Length = 388
Score = 29.1 bits (62), Expect = 3.8
Identities = 14/44 (31%), Positives = 17/44 (38%)
Frame = +2
Query: 575 PXXPARPPXXQNXTPTPXXXXRXXPXPATGTKXAPXNPPRXXXP 706
P P+ P PTP R P P++G P PP P
Sbjct: 265 PPPPSVTPMPPPMPPTPGMTPRPPPPPSSGMWPPPPPPPPGRTP 308
Score = 28.7 bits (61), Expect = 5.0
Identities = 15/50 (30%), Positives = 15/50 (30%)
Frame = +2
Query: 353 PEXAKXPRATPGXPXGPXAGKXXTARDXXNGPXXXPPPXPPPXXXXXGPP 502
P P TP P P PPP PPP GPP
Sbjct: 262 PVPPPPPSVTPMPPPMPPTPGMTPRPPPPPSSGMWPPPPPPPPGRTPGPP 311
>U58736-1|AAB00598.1| 302|Caenorhabditis elegans Dumpy : shorter
than wild-typeprotein 3 protein.
Length = 302
Score = 29.1 bits (62), Expect = 3.8
Identities = 24/84 (28%), Positives = 27/84 (32%), Gaps = 6/84 (7%)
Frame = +2
Query: 269 GPGAPXPXKRTXRPAGXAXPXTGXENX----APEXAKXPRATPGXPX--GPXAGKXXTAR 430
GP P K P G A +G + P P+ PG P GP
Sbjct: 162 GPAGPPGPKGLPGPQGDAGT-SGQDGVPGLPGPPGPSGPQGAPGVPGEKGPTGEPGKVIN 220
Query: 431 DXXNGPXXXPPPXPPPXXXXXGPP 502
GP PP PP GPP
Sbjct: 221 GAPPGPPG--PPGPPGPQGPPGPP 242
>U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA
binding protein protein.
Length = 398
Score = 29.1 bits (62), Expect = 3.8
Identities = 14/44 (31%), Positives = 17/44 (38%)
Frame = +2
Query: 575 PXXPARPPXXQNXTPTPXXXXRXXPXPATGTKXAPXNPPRXXXP 706
P P+ P PTP R P P++G P PP P
Sbjct: 275 PPPPSVTPMPPPMPPTPGMTPRPPPPPSSGMWPPPPPPPPGRTP 318
Score = 28.7 bits (61), Expect = 5.0
Identities = 15/50 (30%), Positives = 15/50 (30%)
Frame = +2
Query: 353 PEXAKXPRATPGXPXGPXAGKXXTARDXXNGPXXXPPPXPPPXXXXXGPP 502
P P TP P P PPP PPP GPP
Sbjct: 272 PVPPPPPSVTPMPPPMPPTPGMTPRPPPPPSSGMWPPPPPPPPGRTPGPP 321
>Z99773-3|CAE11316.1| 305|Caenorhabditis elegans Hypothetical
protein H06A10.2 protein.
Length = 305
Score = 28.7 bits (61), Expect = 5.0
Identities = 26/86 (30%), Positives = 29/86 (33%), Gaps = 9/86 (10%)
Frame = +2
Query: 269 GPG-APXPXKRTXRPAGXAXPXT-GXENXAPEXAKXPR------ATPGXPXGPXAGKXXT 424
GPG +P + +P P G AP AK P A P P GP
Sbjct: 113 GPGGSPGKPGKPGKPGAPGAPGAAGKGASAPCEAKTPPPCQPCPAGPPGPPGPDGPAGPA 172
Query: 425 ARDXXNG-PXXXPPPXPPPXXXXXGP 499
D G P PP PP GP
Sbjct: 173 GPDGEAGSPAAPSPPGPPGPPGPAGP 198
Score = 27.9 bits (59), Expect = 8.8
Identities = 21/78 (26%), Positives = 22/78 (28%), Gaps = 2/78 (2%)
Frame = +2
Query: 272 PGAPXPXKRTXRPAGXAXPXTGXENXAPEXAKXPRATPGX--PXGPXAGKXXTARDXXNG 445
PG P P P G + A E A PG P GP
Sbjct: 190 PGPPGPAGPAGNDGAAGTP--GPDGPAGESTYPEPAGPGPAGPPGPAGPPGPDGASPTAA 247
Query: 446 PXXXPPPXPPPXXXXXGP 499
P PP PP GP
Sbjct: 248 PGAAGPPGPPGPAGAPGP 265
>Z77662-5|CAB01192.2| 579|Caenorhabditis elegans Hypothetical
protein F47B8.5 protein.
Length = 579
Score = 28.7 bits (61), Expect = 5.0
Identities = 19/69 (27%), Positives = 20/69 (28%)
Frame = +2
Query: 272 PGAPXPXKRTXRPAGXAXPXTGXENXAPEXAKXPRATPGXPXGPXAGKXXTARDXXNGPX 451
P AP PA P APE A P P P A + P
Sbjct: 477 PAAPAEPAPAPAPAPAPAPEAAP---APEPAPAPAPAPAPEAAPAAAPDAAPAEPAPVPE 533
Query: 452 XXPPPXPPP 478
P P P P
Sbjct: 534 VAPAPAPAP 542
>U61948-2|AAB03143.2| 345|Caenorhabditis elegans Collagen protein
14 protein.
Length = 345
Score = 28.3 bits (60), Expect = 6.6
Identities = 19/71 (26%), Positives = 21/71 (29%), Gaps = 3/71 (4%)
Frame = +2
Query: 272 PGAPXPXKRTXRPAGXAXPXTGXENXAPEXAKXPRATPGXP--XGPXAGKXXTARDXXNG 445
PG P + RP P T P PG P GP + G
Sbjct: 242 PGIPGAPGQPGRPGPPGEPGTYKTEVGPAGRAGAPGRPGPPGQPGPAGPPGENGKGGGQG 301
Query: 446 PXXXP-PPXPP 475
P P PP P
Sbjct: 302 PSGLPGPPGQP 312
>U53333-6|AAA96159.2| 304|Caenorhabditis elegans Collagen protein
33 protein.
Length = 304
Score = 28.3 bits (60), Expect = 6.6
Identities = 20/78 (25%), Positives = 22/78 (28%)
Frame = +2
Query: 269 GPGAPXPXKRTXRPAGXAXPXTGXENXAPEXAKXPRATPGXPXGPXAGKXXTARDXXNGP 448
GP P AG AP P+ PG P P A R + P
Sbjct: 156 GPAGPPGPPGAPGDAGTNGAPGAPGGDAPPGEAGPKGPPGPPGSPGA-PGEPGRPGDDAP 214
Query: 449 XXXPPPXPPPXXXXXGPP 502
P P GPP
Sbjct: 215 SEPLIPGEPGPQGPPGPP 232
>U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect
protein 1, isoformb protein.
Length = 1437
Score = 28.3 bits (60), Expect = 6.6
Identities = 23/84 (27%), Positives = 23/84 (27%), Gaps = 6/84 (7%)
Frame = +2
Query: 269 GPGAPXPXKRTXRPAGXAXPXTGXENXAPEXAKXPRATPGXPXGPXAGKXXTARDXXNGP 448
G A P P P TG P P T G P P G P
Sbjct: 702 GSSALPPITGGPPPPPGLPPITGGPPPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPP 761
Query: 449 XXXPP------PXPPPXXXXXGPP 502
P P PPP GPP
Sbjct: 762 PPPPGGCPPPPPPPPPGGFKGGPP 785
>U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect
protein 1, isoforma protein.
Length = 1435
Score = 28.3 bits (60), Expect = 6.6
Identities = 23/84 (27%), Positives = 23/84 (27%), Gaps = 6/84 (7%)
Frame = +2
Query: 269 GPGAPXPXKRTXRPAGXAXPXTGXENXAPEXAKXPRATPGXPXGPXAGKXXTARDXXNGP 448
G A P P P TG P P T G P P G P
Sbjct: 702 GSSALPPITGGPPPPPGLPPITGGPPPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPP 761
Query: 449 XXXPP------PXPPPXXXXXGPP 502
P P PPP GPP
Sbjct: 762 PPPPGGCPPPPPPPPPGGFKGGPP 785
>M25480-1|AAA27986.1| 326|Caenorhabditis elegans collagen protein.
Length = 326
Score = 28.3 bits (60), Expect = 6.6
Identities = 19/71 (26%), Positives = 21/71 (29%), Gaps = 3/71 (4%)
Frame = +2
Query: 272 PGAPXPXKRTXRPAGXAXPXTGXENXAPEXAKXPRATPGXP--XGPXAGKXXTARDXXNG 445
PG P + RP P T P PG P GP + G
Sbjct: 223 PGIPGAPGQPGRPGPPGEPGTYKTEVGPAGRAGAPGRPGPPGQPGPAGPPGENGKGGGQG 282
Query: 446 PXXXP-PPXPP 475
P P PP P
Sbjct: 283 PSGLPGPPGQP 293
>AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.
Length = 1018
Score = 28.3 bits (60), Expect = 6.6
Identities = 23/84 (27%), Positives = 23/84 (27%), Gaps = 6/84 (7%)
Frame = +2
Query: 269 GPGAPXPXKRTXRPAGXAXPXTGXENXAPEXAKXPRATPGXPXGPXAGKXXTARDXXNGP 448
G A P P P TG P P T G P P G P
Sbjct: 285 GSSALPPITGGPPPPPGLPPITGGPPPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPP 344
Query: 449 XXXPP------PXPPPXXXXXGPP 502
P P PPP GPP
Sbjct: 345 PPPPGGCPPPPPPPPPGGFKGGPP 368
>AF003386-9|AAB54259.1| 1621|Caenorhabditis elegans Hypothetical
protein F59E12.9 protein.
Length = 1621
Score = 25.0 bits (52), Expect(2) = 6.7
Identities = 9/19 (47%), Positives = 10/19 (52%)
Frame = +2
Query: 422 TARDXXNGPXXXPPPXPPP 478
T+R P PPP PPP
Sbjct: 1330 TSRSSSPSPPPPPPPPPPP 1348
Score = 21.4 bits (43), Expect(2) = 6.7
Identities = 7/14 (50%), Positives = 7/14 (50%)
Frame = +2
Query: 458 PPPXPPPXXXXXGP 499
PPP PPP P
Sbjct: 1356 PPPPPPPPTMSKAP 1369
>AF025467-4|AAN65300.1| 1130|Caenorhabditis elegans Hypothetical
protein R148.3b protein.
Length = 1130
Score = 27.9 bits (59), Expect = 8.8
Identities = 15/51 (29%), Positives = 16/51 (31%)
Frame = +2
Query: 326 PXTGXENXAPEXAKXPRATPGXPXGPXAGKXXTARDXXNGPXXXPPPXPPP 478
P AP A P P P +D G PPP PPP
Sbjct: 344 PKVEEPEPAPTPAPAPAEDPVVTPAPEELTGVCYKDDCQGLQTPPPPAPPP 394
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.314 0.133 0.420
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,298,041
Number of Sequences: 27780
Number of extensions: 150794
Number of successful extensions: 860
Number of sequences better than 10.0: 32
Number of HSP's better than 10.0 without gapping: 420
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 733
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1914239236
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
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