Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP15_T7_G22
(777 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAPB8E5.06c |rpl302|rpl3-2, rpl3-b|60S ribosomal protein L3|Sch... 203 2e-53
SPAC17A5.03 |rpl301|rpl3-1, rpl3|60S ribosomal protein L3 |Schiz... 203 2e-53
SPAC644.17c |mrpl9||mitochondrial ribosomal protein subunit L9|S... 30 0.32
SPBC685.09 |orc2|orp2|origin recognition complex subunit Orc2|Sc... 29 0.74
SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr 1|... 27 2.3
SPAC26H5.12 |rpo41||mitochondrial DNA-directed RNA polymerase|Sc... 27 3.0
SPBC21.02 |||TLDc domain protein 2|Schizosaccharomyces pombe|chr... 27 4.0
SPAC16A10.01 |||DUF1212 family protein|Schizosaccharomyces pombe... 26 6.9
SPAC22F8.07c |rtf1||replication termination factor Rtf1|Schizosa... 25 9.2
SPCC965.13 |||membrane transporter|Schizosaccharomyces pombe|chr... 25 9.2
>SPAPB8E5.06c |rpl302|rpl3-2, rpl3-b|60S ribosomal protein
L3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 388
Score = 203 bits (496), Expect = 2e-53
Identities = 98/155 (63%), Positives = 116/155 (74%)
Frame = -1
Query: 579 PVRHTKVLRKVACIGAWHPSRVSFTVARAGQKGYHHRTEMNKKIYRIGQGIHKKDGKVIK 400
P + + LRKVACIGAWHP+ V +TVARAG GY HRT++N KIYRIG G D K
Sbjct: 239 PRKTHRGLRKVACIGAWHPANVQWTVARAGNAGYMHRTQLNSKIYRIGAG---DDAK--- 292
Query: 399 NNASTEYDLSEKSITPMGGFPHYGEVNNDFVMIKGCCMGPKKRIITLRKSLRVHTKRAAL 220
NAST++D +EK ITPMGGF YG V NDFVM+ G GP KR++TLRKSL HT R AL
Sbjct: 293 -NASTDFDATEKRITPMGGFVRYGVVENDFVMLNGATPGPVKRVLTLRKSLLTHTSRKAL 351
Query: 219 EKINLKFIDTSSKFGHGRFQTPADKAAFMGTLKKD 115
E ++LK+IDT+SKFGHGRFQTPA+ F+GTLKKD
Sbjct: 352 EPVSLKWIDTASKFGHGRFQTPAEAKQFLGTLKKD 386
Score = 52.0 bits (119), Expect = 9e-08
Identities = 23/47 (48%), Positives = 32/47 (68%)
Frame = -2
Query: 719 EMAQRTXGEPIPVDSGFAQDEMIDCIGVTKXKGYKGVTSRWHTKKLP 579
E A+ + + + S F Q+EMID IGVT+ KG +G T+RW TK+LP
Sbjct: 193 EWAREHFEKTVDIKSTFEQNEMIDVIGVTRGKGNEGTTARWGTKRLP 239
Score = 33.1 bits (72), Expect = 0.046
Identities = 20/61 (32%), Positives = 32/61 (52%), Gaps = 1/61 (1%)
Frame = -3
Query: 739 GTIEDKVKWPREHXENLSLLILGLPKMK*LTALVSPRXKDTK-VSLLVGTQRSYPRKTHQ 563
G++ DKV+W REH E + + + + + R K + + GT+R PRKTH+
Sbjct: 186 GSVADKVEWAREHFEKTVDIKSTFEQNEMIDVIGVTRGKGNEGTTARWGTKR-LPRKTHR 244
Query: 562 G 560
G
Sbjct: 245 G 245
>SPAC17A5.03 |rpl301|rpl3-1, rpl3|60S ribosomal protein L3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 388
Score = 203 bits (496), Expect = 2e-53
Identities = 98/155 (63%), Positives = 116/155 (74%)
Frame = -1
Query: 579 PVRHTKVLRKVACIGAWHPSRVSFTVARAGQKGYHHRTEMNKKIYRIGQGIHKKDGKVIK 400
P + + LRKVACIGAWHP+ V +TVARAG GY HRT++N KIYRIG G D K
Sbjct: 239 PRKTHRGLRKVACIGAWHPANVQWTVARAGNAGYMHRTQLNSKIYRIGAG---DDAK--- 292
Query: 399 NNASTEYDLSEKSITPMGGFPHYGEVNNDFVMIKGCCMGPKKRIITLRKSLRVHTKRAAL 220
NAST++D +EK ITPMGGF YG V NDFVM+ G GP KR++TLRKSL HT R AL
Sbjct: 293 -NASTDFDATEKRITPMGGFVRYGVVENDFVMLNGATPGPVKRVLTLRKSLLTHTSRKAL 351
Query: 219 EKINLKFIDTSSKFGHGRFQTPADKAAFMGTLKKD 115
E ++LK+IDT+SKFGHGRFQTPA+ F+GTLKKD
Sbjct: 352 EPVSLKWIDTASKFGHGRFQTPAEAKQFLGTLKKD 386
Score = 52.0 bits (119), Expect = 9e-08
Identities = 23/47 (48%), Positives = 32/47 (68%)
Frame = -2
Query: 719 EMAQRTXGEPIPVDSGFAQDEMIDCIGVTKXKGYKGVTSRWHTKKLP 579
E A+ + + + S F Q+EMID IGVT+ KG +G T+RW TK+LP
Sbjct: 193 EWAREHFEKTVDIKSTFEQNEMIDVIGVTRGKGNEGTTARWGTKRLP 239
Score = 33.1 bits (72), Expect = 0.046
Identities = 20/61 (32%), Positives = 32/61 (52%), Gaps = 1/61 (1%)
Frame = -3
Query: 739 GTIEDKVKWPREHXENLSLLILGLPKMK*LTALVSPRXKDTK-VSLLVGTQRSYPRKTHQ 563
G++ DKV+W REH E + + + + + R K + + GT+R PRKTH+
Sbjct: 186 GSVADKVEWAREHFEKTVDIKSTFEQNEMIDVIGVTRGKGNEGTTARWGTKR-LPRKTHR 244
Query: 562 G 560
G
Sbjct: 245 G 245
>SPAC644.17c |mrpl9||mitochondrial ribosomal protein subunit
L9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 259
Score = 30.3 bits (65), Expect = 0.32
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = -2
Query: 671 FAQDEMIDCIGVTKXKGYKGVTSRW 597
F + +D G+TK KG+ GV RW
Sbjct: 145 FKPKQYVDVKGITKGKGFAGVMKRW 169
>SPBC685.09 |orc2|orp2|origin recognition complex subunit
Orc2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 535
Score = 29.1 bits (62), Expect = 0.74
Identities = 11/33 (33%), Positives = 21/33 (63%)
Frame = +1
Query: 406 NFAILFVDSLSNTIDFLVHFSTVMITFLTSTSY 504
NFA+L+ SL ++ +F++H +T + T+Y
Sbjct: 377 NFALLWDTSLESSFNFVMHDATTFARYYNETTY 409
>SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 230
Score = 27.5 bits (58), Expect = 2.3
Identities = 13/41 (31%), Positives = 22/41 (53%)
Frame = +1
Query: 373 QIILSRCIVFNNFAILFVDSLSNTIDFLVHFSTVMITFLTS 495
++ L RC++ F +LF S S + FL S + I + +S
Sbjct: 109 ELSLFRCLLLFFFFLLFFLSFSFSFSFLFFLSQIFIVYFSS 149
>SPAC26H5.12 |rpo41||mitochondrial DNA-directed RNA
polymerase|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1120
Score = 27.1 bits (57), Expect = 3.0
Identities = 13/38 (34%), Positives = 19/38 (50%)
Frame = -2
Query: 203 NSLTPRPSSVMVDSRRRLTRLHSWVHSRRIVFAKKLRL 90
NS+ PR + R+ L L + HS+R F KL +
Sbjct: 614 NSINPRDKVIWHTRRKELAALKTGAHSQRCDFNYKLEI 651
>SPBC21.02 |||TLDc domain protein 2|Schizosaccharomyces pombe|chr
2|||Manual
Length = 511
Score = 26.6 bits (56), Expect = 4.0
Identities = 10/20 (50%), Positives = 13/20 (65%)
Frame = -3
Query: 136 HGYTQEGSYSRRSCGYHNPS 77
HGY+ + R+ C YHNPS
Sbjct: 307 HGYSMY-ALERKMCNYHNPS 325
>SPAC16A10.01 |||DUF1212 family protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 830
Score = 25.8 bits (54), Expect = 6.9
Identities = 13/44 (29%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
Frame = +1
Query: 358 NGFLRQIILSRCIVFNNFAI-LFVDSLSNTIDFLVHFSTVMITF 486
N FL + SRC V N+ I + V S ++F++ M+ +
Sbjct: 366 NSFLHNMGYSRCYVDENYHITIHVSSYERRVEFMLAVCEAMMLY 409
>SPAC22F8.07c |rtf1||replication termination factor
Rtf1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 466
Score = 25.4 bits (53), Expect = 9.2
Identities = 14/42 (33%), Positives = 19/42 (45%)
Frame = +1
Query: 418 LFVDSLSNTIDFLVHFSTVMITFLTSTSYSERHPRRMPSSNA 543
LF+D LS D L+H ++ + T S H SNA
Sbjct: 421 LFIDGLSTFSDTLIHLHKMLNSSPEETYISNLHDSYTAFSNA 462
>SPCC965.13 |||membrane transporter|Schizosaccharomyces pombe|chr
3|||Manual
Length = 537
Score = 25.4 bits (53), Expect = 9.2
Identities = 13/63 (20%), Positives = 26/63 (41%)
Frame = +1
Query: 550 FPKNLGVSYGGSFFVCQREVTPLYPLXLVTPMQSIISSWANPESTGIGSPXVLWAISLCP 729
F N + Y G+ + + + ++ P+Q+ + W G+ P + ISL
Sbjct: 340 FVDNYKMGYMGANLTYLNFLVGVTIVVMLQPIQNWLYRWDKRRHGGVARPEARFLISLLT 399
Query: 730 QWY 738
W+
Sbjct: 400 VWF 402
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,358,613
Number of Sequences: 5004
Number of extensions: 72457
Number of successful extensions: 185
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 171
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 183
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 375345278
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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