Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP15_T7_G19
         (768 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr 2||...    70   3e-13
SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomy...    44   2e-05
SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces pomb...    42   1e-04
SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit Arp42|Sc...    39   7e-04
SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex s...    32   0.10 
SPAC4F8.07c |hxk2||hexokinase 2 |Schizosaccharomyces pombe|chr 1...    27   2.2  
SPBC29A10.10c |||tRNA-splicing endonuclease positive effector |S...    25   9.0  
SPBC646.02 |cwf11||complexed with Cdc5 protein Cwf11 |Schizosacc...    25   9.0  

>SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 375

 Score = 70.1 bits (164), Expect = 3e-13
 Identities = 31/38 (81%), Positives = 33/38 (86%)
 Frame = -3

Query: 520 PXTMKIXIXAPPERXYSVWIGGSILASLXTFQQMWISK 407
           P +MK+ I APPER YSVWIGGSILASL TFQQMWISK
Sbjct: 322 PSSMKVKIVAPPERKYSVWIGGSILASLSTFQQMWISK 359



 Score = 35.9 bits (79), Expect = 0.006
 Identities = 14/16 (87%), Positives = 15/16 (93%)
 Frame = -1

Query: 408 KQEYDESGPSIVHRKC 361
           KQEYDESGP IV+RKC
Sbjct: 359 KQEYDESGPGIVYRKC 374


>SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 433

 Score = 44.0 bits (99), Expect = 2e-05
 Identities = 17/26 (65%), Positives = 22/26 (84%)
 Frame = -3

Query: 484 ERXYSVWIGGSILASLXTFQQMWISK 407
           ER Y+ W+GGSIL+SL TF Q+WIS+
Sbjct: 389 ERSYASWLGGSILSSLGTFHQLWISR 414


>SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 379

 Score = 41.9 bits (94), Expect = 1e-04
 Identities = 17/33 (51%), Positives = 26/33 (78%)
 Frame = -3

Query: 508 KIXIXAPPERXYSVWIGGSILASLXTFQQMWIS 410
           ++ I A PER ++ W+GGSILASL TF+++ I+
Sbjct: 331 QVKIYASPERMHNAWLGGSILASLSTFRRLLIT 363


>SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit
           Arp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 430

 Score = 39.1 bits (87), Expect = 7e-04
 Identities = 15/22 (68%), Positives = 18/22 (81%)
 Frame = -3

Query: 472 SVWIGGSILASLXTFQQMWISK 407
           +VW GGSILASL  FQ +W+SK
Sbjct: 390 AVWFGGSILASLDNFQHLWVSK 411


>SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex
           subunit Arp2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 390

 Score = 31.9 bits (69), Expect = 0.10
 Identities = 14/35 (40%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
 Frame = -3

Query: 508 KIXIXAPPERXYSVWIGGSILASLXT-FQQMWISK 407
           K+ I   P R ++V+IGG++LA +      MW+SK
Sbjct: 337 KVKIEDAPRRRHAVFIGGAVLADIMAQNDHMWVSK 371


>SPAC4F8.07c |hxk2||hexokinase 2 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 455

 Score = 27.5 bits (58), Expect = 2.2
 Identities = 13/40 (32%), Positives = 20/40 (50%)
 Frame = +2

Query: 287 NGDYKPELSSRPRAAGGXDARCVXKHFLCTMEGPDSSYSC 406
           NG Y  +++  P+ AG    +C   H L  ME   + +SC
Sbjct: 225 NGAYVEQMNQIPKLAG----KCTGDHMLINMEWGATDFSC 260


>SPBC29A10.10c |||tRNA-splicing endonuclease positive effector
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1944

 Score = 25.4 bits (53), Expect = 9.0
 Identities = 12/42 (28%), Positives = 22/42 (52%), Gaps = 2/42 (4%)
 Frame = -3

Query: 388 WPLHCTQEVLXNAPRVXASSSPRP--AAQFRLVISVNLIVRK 269
           W +   QEVL   P++  SS+ +P   A + ++ S  ++  K
Sbjct: 125 WDIFRLQEVLKTVPKIDTSSASKPILCAFYEILYSPRILHNK 166


>SPBC646.02 |cwf11||complexed with Cdc5 protein Cwf11
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1284

 Score = 25.4 bits (53), Expect = 9.0
 Identities = 11/30 (36%), Positives = 14/30 (46%)
 Frame = +2

Query: 404 CFRDPHLLEGXXGGEDRSTDPYGVXPLWRS 493
           CF   HLL     G+D + + YG    W S
Sbjct: 796 CFHQGHLLYLSDEGKDETLERYGTLSSWIS 825


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,539,372
Number of Sequences: 5004
Number of extensions: 22488
Number of successful extensions: 41
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 39
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 41
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 369323696
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)