Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP15_T7_G18
(967 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 29 1.3
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 27 3.0
SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr 1... 27 4.0
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 28.7 bits (61), Expect = 1.3
Identities = 12/34 (35%), Positives = 12/34 (35%)
Frame = +3
Query: 642 PPPPPXXXXXXXXXXXXPPPPPXXXXXXXXXPPP 743
PPPPP P PPP PPP
Sbjct: 733 PPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPP 766
Score = 28.7 bits (61), Expect = 1.3
Identities = 12/34 (35%), Positives = 12/34 (35%)
Frame = +2
Query: 644 PPPPXXXXXXXXXXXXPPPPPXXXXXXXXXPPPP 745
PPPP P PPP PPPP
Sbjct: 734 PPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPP 767
Score = 27.5 bits (58), Expect = 3.0
Identities = 10/22 (45%), Positives = 10/22 (45%)
Frame = +3
Query: 642 PPPPPXXXXXXXXXXXXPPPPP 707
PPPPP PPPPP
Sbjct: 761 PPPPPPPPGVAGAGPPPPPPPP 782
Score = 27.5 bits (58), Expect = 3.0
Identities = 10/22 (45%), Positives = 10/22 (45%)
Frame = +3
Query: 642 PPPPPXXXXXXXXXXXXPPPPP 707
PPPPP PPPPP
Sbjct: 762 PPPPPPPGVAGAGPPPPPPPPP 783
Score = 27.1 bits (57), Expect = 4.0
Identities = 9/14 (64%), Positives = 9/14 (64%)
Frame = -2
Query: 777 PPPPPPPXXXXGGG 736
PPPPPPP G G
Sbjct: 761 PPPPPPPPGVAGAG 774
Score = 27.1 bits (57), Expect = 4.0
Identities = 9/15 (60%), Positives = 9/15 (60%)
Frame = -2
Query: 777 PPPPPPPXXXXGGGG 733
PPPPPPP GG
Sbjct: 775 PPPPPPPPPAVSAGG 789
Score = 26.6 bits (56), Expect = 5.2
Identities = 13/36 (36%), Positives = 13/36 (36%), Gaps = 1/36 (2%)
Frame = +2
Query: 641 TPPP-PXXXXXXXXXXXXPPPPPXXXXXXXXXPPPP 745
TP P P PPPPP PPPP
Sbjct: 743 TPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPP 778
Score = 26.2 bits (55), Expect = 6.9
Identities = 12/37 (32%), Positives = 12/37 (32%)
Frame = +1
Query: 634 KXNPPPPXXXXXXXXXXXXXPPPPPXXXXXXXXXPPP 744
K PPPP P PPP PPP
Sbjct: 730 KSPPPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPP 766
Score = 25.8 bits (54), Expect = 9.1
Identities = 9/18 (50%), Positives = 9/18 (50%)
Frame = +2
Query: 692 PPPPPXXXXXXXXXPPPP 745
PPPPP PPPP
Sbjct: 762 PPPPPPPGVAGAGPPPPP 779
Score = 25.8 bits (54), Expect = 9.1
Identities = 9/18 (50%), Positives = 9/18 (50%)
Frame = +2
Query: 692 PPPPPXXXXXXXXXPPPP 745
PPPPP PPPP
Sbjct: 763 PPPPPPGVAGAGPPPPPP 780
Score = 25.8 bits (54), Expect = 9.1
Identities = 9/18 (50%), Positives = 9/18 (50%)
Frame = +2
Query: 692 PPPPPXXXXXXXXXPPPP 745
PPPPP PPPP
Sbjct: 764 PPPPPGVAGAGPPPPPPP 781
Score = 24.2 bits (50), Expect(2) = 3.7
Identities = 8/14 (57%), Positives = 8/14 (57%)
Frame = -2
Query: 774 PPPPPPXXXXGGGG 733
PPPPPP G G
Sbjct: 761 PPPPPPPPGVAGAG 774
Score = 21.0 bits (42), Expect(2) = 3.7
Identities = 6/6 (100%), Positives = 6/6 (100%)
Frame = -2
Query: 777 PPPPPP 760
PPPPPP
Sbjct: 732 PPPPPP 737
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 27.5 bits (58), Expect = 3.0
Identities = 10/22 (45%), Positives = 10/22 (45%)
Frame = +3
Query: 642 PPPPPXXXXXXXXXXXXPPPPP 707
PPPPP PPPPP
Sbjct: 9 PPPPPPPPGFEPPSQPPPPPPP 30
Score = 26.6 bits (56), Expect = 5.2
Identities = 10/23 (43%), Positives = 10/23 (43%)
Frame = +1
Query: 640 NPPPPXXXXXXXXXXXXXPPPPP 708
NPPPP PPPPP
Sbjct: 8 NPPPPPPPPGFEPPSQPPPPPPP 30
Score = 25.8 bits (54), Expect = 9.1
Identities = 9/18 (50%), Positives = 9/18 (50%)
Frame = +2
Query: 692 PPPPPXXXXXXXXXPPPP 745
PPPPP PPPP
Sbjct: 10 PPPPPPPGFEPPSQPPPP 27
Score = 25.8 bits (54), Expect = 9.1
Identities = 9/18 (50%), Positives = 9/18 (50%)
Frame = +2
Query: 692 PPPPPXXXXXXXXXPPPP 745
PPPPP PPPP
Sbjct: 11 PPPPPPGFEPPSQPPPPP 28
Score = 25.8 bits (54), Expect = 9.1
Identities = 9/18 (50%), Positives = 9/18 (50%)
Frame = +2
Query: 692 PPPPPXXXXXXXXXPPPP 745
PPPPP PPPP
Sbjct: 12 PPPPPGFEPPSQPPPPPP 29
>SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1841
Score = 27.1 bits (57), Expect = 4.0
Identities = 9/15 (60%), Positives = 9/15 (60%)
Frame = -2
Query: 777 PPPPPPPXXXXGGGG 733
PPPPPPP GG
Sbjct: 946 PPPPPPPPLVSAAGG 960
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,486,790
Number of Sequences: 5004
Number of extensions: 20290
Number of successful extensions: 186
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 26
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 107
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 495302128
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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